Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C5S_RS0102830 Genome accession   NZ_ACFK01000001
Coordinates   582225..582740 (-) Length   171 a.a.
NCBI ID   WP_009874495.1    Uniprot ID   P57610
Organism   Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 577225..587740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5S_RS0102820 - 578172..579752 (-) 1581 WP_009874493.1 peptide chain release factor 3 -
  C5S_RS0102825 - 580864..581442 (-) 579 WP_009874494.1 NfuA family Fe-S biogenesis protein -
  C5S_RS0102830 ssb 582225..582740 (-) 516 WP_009874495.1 single-stranded DNA-binding protein Machinery gene
  C5S_RS0102835 dnaB 583410..584807 (+) 1398 WP_009874496.1 replicative DNA helicase -
  C5S_RS0102840 gshB 585054..586016 (+) 963 WP_009874497.1 glutathione synthase -
  C5S_RS0102845 ruvX 586027..586434 (+) 408 WP_010896159.1 Holliday junction resolvase RuvX -
  C5S_RS0102850 - 586552..587154 (+) 603 WP_009874499.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19355.77 Da        Isoelectric Point: 6.1147

>NTDB_id=64487 C5S_RS0102830 WP_009874495.1 582225..582740(-) (ssb) [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRIVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGLERYTTEIIVNIGGTMQMLGNRNSNLQAMTVNDKNSTGIKIKKTDAVEFDKKIETHESNKDLTHSP
SEIDFDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=64487 C5S_RS0102830 WP_009874495.1 582225..582740(-) (ssb) [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
ATGGCAAGTAGAGGTGTAAATAAAGTTATTCTTATTGGTCATTTAGGTCAAGATCCCGAAGTTCGTTATATGCCTAATGG
TAATGCAGTAGTAAATATGACTTTAGCTACTTCAGAGAACTGGAAAGATAAAAATACTGGTGAAAATAAAGAAAAAACAG
AATGGCATAGAATAGTTTTATTTGGAAAATTAGCTGAAATTGCTGGTGAATATCTTCGAAAAGGTTCTCAAGTGTATATT
GAAGGATCGTTGCAAACTAGAAAATGGCAAGATCAAAATGGACTAGAACGTTATACAACAGAAATTATTGTAAATATTGG
TGGTACAATGCAAATGTTAGGCAATCGTAATTCTAACTTGCAGGCAATGACGGTAAATGACAAAAACAGTACCGGAATAA
AAATAAAAAAAACAGATGCAGTAGAGTTTGATAAAAAGATAGAAACACATGAATCGAATAAAGATTTAACTCATTCTCCT
TCGGAAATAGATTTTGATGATGAAATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P57610

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.497

100

0.585
  ssb Glaesserella parasuis strain SC1401

47.514

100

0.503
  ssb Neisseria meningitidis MC58

43.182

100

0.444
  ssb Neisseria gonorrhoeae MS11

43.182

100

0.444

Multiple sequence alignment