Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LMY38_RS09345 Genome accession   NZ_CP090790
Coordinates   2172205..2173398 (+) Length   397 a.a.
NCBI ID   WP_013140879.1    Uniprot ID   A0A0M0VP22
Organism   Bifidobacterium longum strain D2TC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2167205..2178398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMY38_RS09325 (LMY38_09325) pgsA 2169789..2170439 (+) 651 WP_007054476.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LMY38_RS09330 (LMY38_09330) - 2170451..2170984 (+) 534 WP_029679484.1 nicotinamide-nucleotide amidohydrolase family protein -
  LMY38_RS09335 (LMY38_09335) - 2171044..2171559 (+) 516 WP_080515174.1 helix-turn-helix transcriptional regulator -
  LMY38_RS09340 (LMY38_09340) - 2171671..2171904 (+) 234 WP_029679486.1 DUF3046 domain-containing protein -
  LMY38_RS09345 (LMY38_09345) recA 2172205..2173398 (+) 1194 WP_013140879.1 recombinase RecA Machinery gene
  LMY38_RS09350 (LMY38_09350) - 2173401..2173994 (+) 594 WP_013140878.1 regulatory protein RecX -
  LMY38_RS09360 (LMY38_09360) raiA 2174873..2175535 (+) 663 WP_007052648.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 41770.54 Da        Isoelectric Point: 5.8610

>NTDB_id=644806 LMY38_RS09345 WP_013140879.1 2172205..2173398(+) (recA) [Bifidobacterium longum strain D2TC]
MALETKPAKDPAAEDKHELDPKRKAALDTALAQVEKSFGKGSAMRLGDQPEQNVEVIPTGSLALDMALGIGGLPKGRIVE
IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVI
DSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRL
DIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE
KVRQFLKDNPAITEEIENKVKAEFGLIGSADQFAEDGEAAAAAAVSEAAAADVAKDSKAAAAPAAKTTRAKAGAAKA

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=644806 LMY38_RS09345 WP_013140879.1 2172205..2173398(+) (recA) [Bifidobacterium longum strain D2TC]
ATGGCACTTGAGACCAAGCCGGCCAAGGACCCGGCAGCCGAGGACAAGCACGAGCTCGATCCCAAGCGCAAGGCGGCGCT
GGACACCGCGCTGGCGCAGGTTGAGAAGAGCTTTGGCAAAGGTTCCGCAATGCGACTGGGCGACCAGCCCGAGCAGAACG
TCGAGGTGATTCCCACCGGTTCGTTGGCCCTCGATATGGCGCTCGGCATCGGCGGCCTGCCCAAGGGCCGCATCGTGGAG
ATCTACGGCCCCGAATCATCCGGTAAGACCACGCTCGCATTGCATGTGGTGGCCAATGCCCAGAAGAAGGGCGGCGTGGC
GGCCTACATCGATGCCGAACACGCACTCGACCCGGCCTACGCCCGCAAGCTCGGCGTGGACACCGACTCACTCATCGTCT
CCCAGCCGGATAACGGCGAGCAGGCCCTCGAAATCGCCGACATGCTGATTCGCTCCGGTGCACTTGACGTCATCGTCATC
GACTCGGTCGCCGCCCTAGTGCCGAAGGCCGAAATCGAAGGCGAAATGGGAGACAGCCATGTTGGTTTGCAGGCCCGACT
CATGAGTCAGGCGCTGCGCAAGATGACCGGCGCGTTGGCTCAGGCCGGCACCACCGCCATCTTCATCAACCAGCTGCGTG
AAAAGATCGGCGTGTTCTTCGGCAATCCCGAAACCACCACCGGCGGCAAGGCCCTGAAGTTCTATGCCTCCGTGCGTCTC
GACATTCGTCGTATTCAAACCCTGAAGAATGGCGACGAAGCGGTGGGCAACCGCACGCGCGTCAAGGTGGTCAAGAACAA
GATGGCCCCGCCTTTCAAGTCCGCCGAATTCGACATGCTCTACGGTGAAGGCATTTCCCGTGAGGGCTCGGTAATCGACA
TGGCTCAGCAGGTTGGCGTGGTCAAGAAGTCCGGTTCGTGGTTCACCTATGAGGGTGATCAGCTCGGTCAGGGACGCGAG
AAGGTTCGTCAGTTCCTTAAGGACAACCCGGCCATCACCGAGGAGATTGAGAATAAGGTCAAGGCCGAGTTCGGTCTGAT
CGGTTCCGCCGACCAGTTCGCGGAAGATGGCGAAGCCGCAGCAGCGGCCGCTGTCAGCGAGGCCGCCGCTGCCGACGTGG
CCAAGGACAGCAAGGCCGCAGCGGCGCCTGCTGCCAAAACGACCCGTGCCAAGGCCGGCGCAGCTAAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(26-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M0VP22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.465

83.879

0.549
  recA Acinetobacter baylyi ADP1

63.824

85.642

0.547
  recA Acinetobacter baumannii D1279779

64.653

83.375

0.539
  recA Streptococcus mitis NCTC 12261

59.718

89.421

0.534
  recA Neisseria gonorrhoeae MS11

64.242

83.123

0.534
  recA Neisseria gonorrhoeae MS11

64.242

83.123

0.534
  recA Neisseria gonorrhoeae strain FA1090

64.242

83.123

0.534
  recA Streptococcus mitis SK321

59.437

89.421

0.531
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.72

82.62

0.526
  recA Bacillus subtilis subsp. subtilis str. 168

64.506

81.612

0.526
  recA Ralstonia pseudosolanacearum GMI1000

66.454

78.841

0.524
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.236

83.375

0.519
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.777

81.36

0.519
  recA Vibrio cholerae strain A1552

63.777

81.36

0.519
  recA Glaesserella parasuis strain SC1401

63.75

80.605

0.514
  recA Streptococcus pneumoniae D39

59.824

85.894

0.514
  recA Streptococcus pneumoniae TIGR4

59.824

85.894

0.514
  recA Streptococcus pneumoniae Rx1

59.824

85.894

0.514
  recA Streptococcus pneumoniae R6

59.824

85.894

0.514
  recA Streptococcus mutans UA159

61.818

83.123

0.514
  recA Latilactobacillus sakei subsp. sakei 23K

62.154

81.864

0.509
  recA Lactococcus lactis subsp. cremoris KW2

61.212

83.123

0.509
  recA Streptococcus pyogenes NZ131

61.28

82.62

0.506
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.347

84.887

0.504
  recA Helicobacter pylori strain NCTC11637

60.671

82.62

0.501
  recA Helicobacter pylori 26695

60.671

82.62

0.501