Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NEISUBOT_RS06505 Genome accession   NZ_ACEO02000007
Coordinates   4492..4779 (+) Length   95 a.a.
NCBI ID   WP_004520163.1    Uniprot ID   A0AAF1BTY2
Organism   Neisseria subflava NJ9703     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..9779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEISUBOT_RS06505 (NEISUBOT_04549) comE 4492..4779 (+) 288 WP_004520163.1 ComEA family DNA-binding protein Machinery gene
  NEISUBOT_RS06510 (NEISUBOT_04550) comP 4968..5462 (+) 495 WP_050767750.1 type IV pilin protein Machinery gene
  NEISUBOT_RS06515 (NEISUBOT_04552) pyrB 6505..7425 (+) 921 WP_039862268.1 aspartate carbamoyltransferase -
  NEISUBOT_RS06520 (NEISUBOT_04553) pyrI 7436..7894 (+) 459 WP_004520167.1 aspartate carbamoyltransferase regulatory subunit -
  NEISUBOT_RS06525 (NEISUBOT_04554) - 8088..8754 (+) 667 Protein_4 hypothetical protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9791.48 Da        Isoelectric Point: 10.4923

>NTDB_id=64473 NEISUBOT_RS06505 WP_004520163.1 4492..4779(+) (comE) [Neisseria subflava NJ9703]
MKKFLFGVFAAVCTAFSLAAVNVNTASSAELEALPGIGPAKAKAIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=64473 NEISUBOT_RS06505 WP_004520163.1 4492..4779(+) (comE) [Neisseria subflava NJ9703]
ATGAAGAAATTTTTATTTGGTGTCTTTGCCGCCGTGTGTACGGCATTCTCTTTGGCTGCCGTGAACGTCAATACGGCCTC
TTCTGCCGAACTGGAGGCATTGCCGGGTATCGGCCCGGCTAAGGCGAAAGCGATTGTGGAATATCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCGCAGCCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  comE Neisseria gonorrhoeae MS11

64

100

0.674
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.878

86.316

0.474

Multiple sequence alignment