Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L0Z67_RS02240 Genome accession   NZ_CP090667
Coordinates   468850..469548 (+) Length   232 a.a.
NCBI ID   WP_062567315.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. PB2-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 463850..474548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Z67_RS02230 uvrA 464480..467299 (-) 2820 WP_237114773.1 excinuclease ABC subunit UvrA -
  L0Z67_RS02235 - 467462..468829 (+) 1368 WP_062567314.1 MFS transporter -
  L0Z67_RS02240 ssb 468850..469548 (+) 699 WP_062567315.1 single-stranded DNA-binding protein Machinery gene
  L0Z67_RS02245 - 469870..471525 (+) 1656 WP_405128405.1 EAL domain-containing protein -
  L0Z67_RS02250 - 471532..472428 (-) 897 WP_405128406.1 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 24993.11 Da        Isoelectric Point: 5.2439

>NTDB_id=644276 L0Z67_RS02240 WP_062567315.1 468850..469548(+) (ssb) [Pseudoalteromonas sp. PB2-1]
MARGVNKVILVGNLGQDPEVRYMPNGNGVANISIATTDSWKDKNTGQMQERTEWHRVVLFGKLAEVAGEYLRKGSQVYIE
GRLQTRKWTDQSGQEKYTTEIVVDMGGQMQMLGGRGGDQQGGGYQGGQSQGGYQGGQQQGGGYGGGSQQAQSNNSYAPQQ
QSAPAQQQQRPQQQPAPQQQSNNQYGGGYNQQQQNNAPQQGGGFAPKPQNAPQGGASNPMEPPIDFDDDIPF

Nucleotide


Download         Length: 699 bp        

>NTDB_id=644276 L0Z67_RS02240 WP_062567315.1 468850..469548(+) (ssb) [Pseudoalteromonas sp. PB2-1]
ATGGCACGCGGTGTGAACAAAGTTATCTTGGTTGGTAATTTAGGCCAAGATCCAGAAGTACGTTATATGCCTAATGGCAA
TGGCGTAGCGAATATCAGCATTGCTACGACAGATAGCTGGAAAGATAAAAACACAGGGCAAATGCAAGAGCGTACTGAAT
GGCACCGTGTTGTGTTATTTGGCAAACTAGCAGAAGTTGCTGGTGAGTATCTTCGTAAAGGTTCACAAGTGTACATTGAA
GGTCGTTTACAAACGCGTAAATGGACTGACCAATCAGGCCAAGAAAAATACACCACAGAGATCGTGGTAGACATGGGTGG
CCAAATGCAAATGCTAGGTGGTCGTGGTGGCGATCAACAAGGTGGTGGTTATCAAGGTGGCCAATCACAAGGCGGTTACC
AAGGTGGTCAACAACAAGGTGGCGGCTACGGCGGTGGCTCACAACAAGCACAAAGCAATAATAGCTATGCTCCACAACAA
CAGTCTGCGCCAGCACAGCAGCAACAGCGCCCGCAGCAGCAACCTGCACCACAACAACAAAGTAATAACCAGTATGGTGG
CGGTTATAATCAACAGCAGCAAAACAACGCGCCACAACAAGGTGGTGGTTTTGCTCCTAAACCTCAAAATGCACCACAAG
GCGGCGCATCAAACCCGATGGAACCACCAATCGATTTTGATGATGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.31

100

0.543
  ssb Glaesserella parasuis strain SC1401

46.957

99.138

0.466
  ssb Neisseria gonorrhoeae MS11

41.126

99.569

0.409
  ssb Neisseria meningitidis MC58

40.693

99.569

0.405