Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   LZI70_RS13045 Genome accession   NZ_CP090614
Coordinates   2862365..2862946 (+) Length   193 a.a.
NCBI ID   WP_255230544.1    Uniprot ID   -
Organism   Vibrio pelagius strain WXL662     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2857365..2867946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZI70_RS13025 (LZI70_13010) panP 2857628..2859271 (-) 1644 WP_255230540.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  LZI70_RS13030 (LZI70_13015) - 2859405..2859932 (-) 528 WP_255230541.1 hypothetical protein -
  LZI70_RS13035 (LZI70_13020) - 2860140..2861045 (-) 906 WP_255230542.1 lysine exporter LysO family protein -
  LZI70_RS13040 (LZI70_13025) - 2861080..2862000 (-) 921 WP_255230543.1 HDOD domain-containing protein -
  LZI70_RS13045 (LZI70_13030) tfoX 2862365..2862946 (+) 582 WP_255230544.1 TfoX/Sxy family DNA transformation protein Regulator
  LZI70_RS13050 (LZI70_13035) - 2863230..2863772 (-) 543 WP_255230545.1 hypothetical protein -
  LZI70_RS13055 (LZI70_13040) - 2863960..2864457 (-) 498 WP_255230546.1 response regulator -
  LZI70_RS13060 (LZI70_13045) - 2864450..2866393 (-) 1944 WP_255230547.1 ATP-binding protein -
  LZI70_RS13065 (LZI70_13050) - 2866579..2867841 (+) 1263 WP_255230548.1 DUF945 family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22125.40 Da        Isoelectric Point: 8.1381

>NTDB_id=644014 LZI70_RS13045 WP_255230544.1 2862365..2862946(+) (tfoX) [Vibrio pelagius strain WXL662]
MTETAFINYVSKFGEHQKRSMFGGTGLFQSDAMFALISEGCLFIRGGESLDEKLTALDCEKYRHVKKQTTATVNYYDITD
LFTCEHPDLDSIIRTSIDNSVQQRSFKKSTASRRLRDLPNMQLTLERMVKKAGVEDVSMFMQLGAPEVFNKVRETYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKSCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=644014 LZI70_RS13045 WP_255230544.1 2862365..2862946(+) (tfoX) [Vibrio pelagius strain WXL662]
ATGACTGAGACAGCATTTATTAACTACGTAAGTAAGTTTGGTGAGCACCAAAAACGTTCAATGTTTGGAGGTACAGGCCT
CTTCCAGAGCGATGCGATGTTTGCATTGATCAGCGAAGGTTGTTTATTTATTCGCGGTGGTGAGTCATTAGATGAAAAAT
TGACGGCTCTAGACTGTGAAAAATATCGCCATGTCAAAAAGCAAACGACAGCCACTGTAAATTACTACGATATTACCGAT
CTGTTTACCTGCGAGCACCCTGATCTGGATAGCATTATTCGAACTTCTATCGATAATTCAGTTCAGCAACGCAGTTTCAA
AAAATCAACGGCCAGTCGCCGTTTACGCGACCTACCTAACATGCAACTCACGTTAGAGCGTATGGTTAAGAAAGCGGGTG
TTGAAGATGTCTCTATGTTCATGCAGTTAGGTGCACCTGAAGTTTTCAATAAGGTTCGTGAAACTTACGGCAATGATGTT
GACTTAAAGCTACTTTGGAAGTTTGCTGGTGCCATTGATGGTATTCACTGGAAACTTCTTCAAGAGCCTCGCAAACAACA
GCTATTAAAGAGCTGCCACTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(9-98)

TfoX C-terminal domain (TfoX_C)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

74.093

100

0.741
  tfoX Vibrio cholerae strain A1552

74.093

100

0.741
  tfoX Vibrio campbellii strain DS40M4

68.394

100

0.684
  tfoX Vibrio parahaemolyticus RIMD 2210633

68.394

100

0.684
  tfoX Aliivibrio fischeri ES114

58.947

98.446

0.58