Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L0Y28_RS05325 Genome accession   NZ_CP090589
Coordinates   1184880..1185953 (+) Length   357 a.a.
NCBI ID   WP_181830401.1    Uniprot ID   -
Organism   Pectobacterium aroidearum strain QJ316     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1179880..1190953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y28_RS05300 (L0Y28_05290) - 1180201..1181799 (-) 1599 WP_256542969.1 sensor domain-containing diguanylate cyclase -
  L0Y28_RS05305 (L0Y28_05295) - 1181979..1182653 (-) 675 WP_180779580.1 MarC family NAAT transporter -
  L0Y28_RS05310 (L0Y28_05300) - 1182737..1183225 (-) 489 WP_015841375.1 SRPBCC family protein -
  L0Y28_RS05315 (L0Y28_05305) - 1183715..1184050 (+) 336 WP_256542970.1 hypothetical protein -
  L0Y28_RS05320 (L0Y28_05310) pncC 1184278..1184772 (+) 495 WP_015841373.1 nicotinamide-nucleotide amidase -
  L0Y28_RS05325 (L0Y28_05315) recA 1184880..1185953 (+) 1074 WP_181830401.1 recombinase RecA Machinery gene
  L0Y28_RS05330 (L0Y28_05320) recX 1185999..1186493 (+) 495 WP_256542971.1 recombination regulator RecX -
  L0Y28_RS05335 (L0Y28_05325) alaS 1186632..1189259 (+) 2628 WP_256542972.1 alanine--tRNA ligase -
  L0Y28_RS05340 (L0Y28_05330) csrA 1189585..1189770 (+) 186 WP_005972168.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38304.74 Da        Isoelectric Point: 4.9805

>NTDB_id=643673 L0Y28_RS05325 WP_181830401.1 1184880..1185953(+) (recA) [Pectobacterium aroidearum strain QJ316]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPAVAEEL
DKKLREMLLHKGNELTPATAGNSHDEDAFADEGNEEF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=643673 L0Y28_RS05325 WP_181830401.1 1184880..1185953(+) (recA) [Pectobacterium aroidearum strain QJ316]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGCCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAGGATCGCTCAATGGATGTTGAAACCATTTCTACAGGCTCCTTGTCCCTTGATATTGCTCTGGGTG
CCGGTGGTTTACCGATGGGCCGTATCGTTGAGATTTATGGCCCGGAATCCTCTGGTAAAACAACGCTAACCTTACAGGTT
ATTGCTGCCGCTCAGCGTGAGGGCAAAACCTGTGCGTTCATTGATGCTGAACATGCGTTGGATCCGATTTATGCGAAAAA
GCTTGGCGTCGATATCGATAATCTGCTGTGTTCTCAGCCGGATACCGGCGAGCAAGCGCTGGAAATCTGTGATGCGCTAA
CGCGCTCCGGCGCGGTTGACGTTATCATCGTCGACTCCGTTGCTGCTTTGACACCGAAAGCCGAAATTGAAGGTGAAATC
GGCGACTCCCACATGGGGCTGGCTGCACGTATGATGAGTCAGGCTATGCGTAAACTGGCAGGTAACCTGAAACAAGCCAA
TACGCTGCTGATCTTCATCAACCAGATTCGTATGAAAATCGGTGTGATGTTCGGTAACCCTGAAACTACCACCGGTGGTA
ACGCGCTGAAGTTTTATGCTTCCGTTCGTCTGGATATTCGCCGTACTGGCGCGATTAAGGAAGGCGAAGAAGTCGTCGGC
AGCGAAACTCGCGTTAAAGTCGTGAAGAATAAAGTGGCAGCACCGTTCAAACAGGCTGAGTTCCAGATTCTGTACGGCGA
AGGTATCAACATCCACGGTGAGCTGGTTGATCTGGGTGTGAAACACAAACTGATCGAAAAAGCGGGTGCCTGGTATAGCT
ATAACGGCGACAAGATTGGTCAGGGCAAAGCAAATGCTTGTAATTTCCTGAAAGAGAACCCGGCGGTTGCTGAGGAACTG
GATAAGAAATTGCGTGAAATGTTGCTGCATAAAGGCAATGAGCTGACACCTGCTACAGCAGGTAATAGCCATGACGAAGA
TGCATTCGCCGACGAAGGCAACGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

83.285

97.199

0.81
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.285

97.199

0.81
  recA Pseudomonas stutzeri DSM 10701

75.841

91.597

0.695
  recA Acinetobacter baylyi ADP1

70.64

96.359

0.681
  recA Glaesserella parasuis strain SC1401

68.555

98.88

0.678
  recA Acinetobacter baumannii D1279779

72.727

92.437

0.672
  recA Neisseria gonorrhoeae MS11

69.325

91.317

0.633
  recA Neisseria gonorrhoeae MS11

69.325

91.317

0.633
  recA Neisseria gonorrhoeae strain FA1090

69.325

91.317

0.633
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.115

0.613
  recA Streptococcus mitis SK321

60

99.44

0.597
  recA Streptococcus pneumoniae R6

59.718

99.44

0.594
  recA Streptococcus mitis NCTC 12261

59.718

99.44

0.594
  recA Streptococcus pneumoniae TIGR4

59.718

99.44

0.594
  recA Streptococcus pneumoniae Rx1

59.718

99.44

0.594
  recA Streptococcus pneumoniae D39

59.718

99.44

0.594
  recA Helicobacter pylori strain NCTC11637

62.614

92.157

0.577
  recA Helicobacter pylori 26695

62.31

92.157

0.574
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.597

93.838

0.569
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.774

91.597

0.566
  recA Lactococcus lactis subsp. cremoris KW2

62.539

90.476

0.566
  recA Streptococcus pyogenes NZ131

62.154

91.036

0.566
  recA Streptococcus mutans UA159

61.846

91.036

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.036

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

89.916

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.19

89.916

0.532