Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LZ599_RS19340 Genome accession   NZ_CP090579
Coordinates   4114232..4114792 (+) Length   186 a.a.
NCBI ID   WP_012320671.1    Uniprot ID   -
Organism   Methylobacterium radiotolerans strain NYY1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4109232..4119792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ599_RS19315 (LZ599_19315) - 4110272..4111201 (+) 930 WP_234740716.1 sulfite oxidase heme-binding subunit YedZ -
  LZ599_RS19320 (LZ599_19320) - 4111270..4111656 (+) 387 WP_024829154.1 hypothetical protein -
  LZ599_RS19325 (LZ599_19325) - 4112187..4112363 (-) 177 WP_012320668.1 hypothetical protein -
  LZ599_RS19330 (LZ599_19330) - 4112513..4112920 (-) 408 WP_012320669.1 DUF4174 domain-containing protein -
  LZ599_RS19335 (LZ599_19335) - 4113044..4114063 (+) 1020 WP_012320670.1 NADP-dependent oxidoreductase -
  LZ599_RS19340 (LZ599_19340) ssb 4114232..4114792 (+) 561 WP_012320671.1 single-stranded DNA-binding protein Machinery gene
  LZ599_RS19345 (LZ599_19345) - 4115007..4115477 (-) 471 WP_234740718.1 hypothetical protein -
  LZ599_RS19350 (LZ599_19350) - 4115679..4115981 (-) 303 WP_234740720.1 GCG_CRPN prefix-to-repeats domain-containing protein -
  LZ599_RS19355 (LZ599_19355) - 4116120..4116434 (-) 315 WP_012320674.1 hypothetical protein -
  LZ599_RS19360 (LZ599_19360) - 4116572..4116838 (-) 267 WP_012320675.1 hypothetical protein -
  LZ599_RS19365 (LZ599_19365) - 4116944..4117726 (-) 783 WP_012320676.1 SDR family NAD(P)-dependent oxidoreductase -
  LZ599_RS19370 (LZ599_19370) - 4117940..4118170 (-) 231 WP_162471041.1 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19773.69 Da        Isoelectric Point: 6.0080

>NTDB_id=643613 LZ599_RS19340 WP_012320671.1 4114232..4114792(+) (ssb) [Methylobacterium radiotolerans strain NYY1]
MAGSVNKVILVGNLGRDPEMRRLGSGDPVCNLRLATSESWKDKATGERKEKTEWHSVVIYNDNLARVAEQYLRKGSKVYI
EGQLQTRKWTDNSGVEKYTTEVVLQRFRGEMTILDGRGGGGDFAGEDEGGGQISRGGDFGGGRGGDRGGDFGGGRAQGGE
RRPAPASSGGGGGSRGGYDLDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=643613 LZ599_RS19340 WP_012320671.1 4114232..4114792(+) (ssb) [Methylobacterium radiotolerans strain NYY1]
ATGGCGGGCAGCGTCAACAAGGTGATTCTGGTGGGCAACCTCGGGCGCGATCCCGAGATGCGCCGCCTCGGTTCGGGCGA
CCCGGTCTGCAACCTGCGGCTCGCGACGTCGGAGTCCTGGAAGGACAAGGCGACCGGCGAGCGCAAGGAGAAGACCGAGT
GGCACTCGGTCGTGATCTACAACGACAATCTCGCCAGGGTGGCCGAGCAGTACCTGCGCAAGGGCTCGAAGGTCTACATC
GAGGGCCAGCTCCAGACCCGGAAGTGGACCGACAATTCCGGCGTCGAGAAGTACACGACCGAGGTGGTGCTCCAGCGCTT
CCGCGGCGAGATGACGATCCTCGACGGGCGCGGCGGCGGCGGCGACTTCGCCGGCGAGGACGAGGGTGGCGGCCAGATCA
GCCGCGGCGGCGACTTCGGCGGTGGCCGGGGCGGTGATCGCGGCGGCGATTTCGGCGGCGGCCGCGCCCAGGGCGGCGAG
CGGCGTCCGGCCCCGGCCTCCTCGGGCGGCGGCGGCGGCAGCCGCGGCGGCTACGACCTCGACGACGACATCCCGTTCTA
G

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.705

100

0.505
  ssb Vibrio cholerae strain A1552

48.901

97.849

0.478
  ssb Neisseria gonorrhoeae MS11

39.247

100

0.392
  ssb Neisseria meningitidis MC58

38.71

100

0.387