Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LPY95_RS05010 Genome accession   NZ_CP090564
Coordinates   1190983..1192041 (+) Length   352 a.a.
NCBI ID   WP_005911892.1    Uniprot ID   A0AAX0HYN4
Organism   Xanthomonas citri pv. malvacearum strain CFBP 2012     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1182028..1214758 1190983..1192041 within 0


Gene organization within MGE regions


Location: 1182028..1214758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPY95_RS04980 (LPY95_04985) recG 1182028..1184181 (+) 2154 WP_269359641.1 ATP-dependent DNA helicase RecG -
  LPY95_RS04985 (LPY95_04990) - 1184311..1185249 (+) 939 WP_016848816.1 nucleoside hydrolase -
  LPY95_RS04990 (LPY95_04995) - 1185321..1185563 (+) 243 WP_005911911.1 type B 50S ribosomal protein L31 -
  LPY95_RS04995 (LPY95_05000) - 1185793..1187082 (+) 1290 WP_269359643.1 citrate synthase -
  LPY95_RS05000 (LPY95_05005) - 1187343..1187993 (-) 651 WP_005911897.1 hypothetical protein -
  LPY95_RS05005 (LPY95_05010) - 1188344..1190866 (-) 2523 WP_269359646.1 penicillin-binding protein 1A -
  LPY95_RS05010 (LPY95_05015) comM 1190983..1192041 (+) 1059 WP_005911892.1 pilus assembly protein PilM Machinery gene
  LPY95_RS05015 (LPY95_05020) - 1192041..1192823 (+) 783 WP_005911890.1 PilN domain-containing protein -
  LPY95_RS05020 (LPY95_05025) - 1192820..1193485 (+) 666 WP_003486177.1 type 4a pilus biogenesis protein PilO -
  LPY95_RS05025 (LPY95_05030) - 1193482..1194015 (+) 534 WP_269359649.1 pilus assembly protein PilP -
  LPY95_RS05030 (LPY95_05035) - 1194035..1195936 (+) 1902 WP_033836793.1 type IV pilus secretin PilQ family protein -
  LPY95_RS05035 (LPY95_05040) - 1195998..1196774 (+) 777 WP_078566289.1 hypothetical protein -
  LPY95_RS05040 (LPY95_05045) - 1196928..1197947 (+) 1020 WP_005911878.1 MoxR family ATPase -
  LPY95_RS05045 (LPY95_05050) - 1197968..1198930 (+) 963 WP_033836792.1 DUF58 domain-containing protein -
  LPY95_RS05050 (LPY95_05055) - 1198933..1199394 (+) 462 WP_033836791.1 DUF4381 family protein -
  LPY95_RS05055 (LPY95_05060) - 1199391..1200398 (+) 1008 WP_269359651.1 VWA domain-containing protein -
  LPY95_RS05060 (LPY95_05065) - 1200395..1202200 (+) 1806 WP_269356774.1 VWA domain-containing protein -
  LPY95_RS05065 (LPY95_05070) - 1202197..1203945 (+) 1749 WP_033485648.1 BatD family protein -
  LPY95_RS05070 (LPY95_05075) - 1204829..1206109 (+) 1281 WP_078566287.1 dicarboxylate/amino acid:cation symporter -
  LPY95_RS05075 (LPY95_05080) tkt 1206335..1208335 (+) 2001 WP_269359653.1 transketolase -
  LPY95_RS05080 (LPY95_05085) - 1208442..1208882 (-) 441 WP_033481503.1 hypothetical protein -
  LPY95_RS05085 (LPY95_05090) - 1208852..1209433 (-) 582 WP_223300980.1 alpha/beta fold hydrolase -
  LPY95_RS05090 (LPY95_05095) fhuE 1209830..1212016 (+) 2187 WP_269359655.1 ferric-rhodotorulic acid/ferric-coprogen receptor FhuE -
  LPY95_RS05095 (LPY95_05100) - 1212486..1212971 (+) 486 WP_005917516.1 hypothetical protein -
  LPY95_RS05100 (LPY95_05105) - 1213139..1213594 (-) 456 Protein_1001 M23 family metallopeptidase -
  LPY95_RS05105 (LPY95_05110) - 1213671..1214758 (+) 1088 WP_269338334.1 IS3-like element ISXac2 family transposase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37579.19 Da        Isoelectric Point: 4.3924

>NTDB_id=643493 LPY95_RS05010 WP_005911892.1 1190983..1192041(+) (comM) [Xanthomonas citri pv. malvacearum strain CFBP 2012]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGSRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=643493 LPY95_RS05010 WP_005911892.1 1190983..1192041(+) (comM) [Xanthomonas citri pv. malvacearum strain CFBP 2012]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCGACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAGCCGTTTCCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCTGCC
GTGGCAGGGTCGGCGGTGATCACCAAGTTGATTCCGATGCCGGCCGATCTGGACGATAGCGACCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAATA
GCCCGGACATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGC
GGCCTGACCGCCAAGGTAATGGACGTGGAGGCCTTTGCGGTCGAAAACGCCTTCGCCCTGGTTGCCAGCGAATTGCCGGT
AGCCGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCCGGGCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACTGACGAAGTGATGCGCCGTTACGGGCTGACCTATGAAGAG
GCTGGCCTTGCCAAGCGTCAGGGCGGCCTGCCGGAAAGCTACGAGGTCGAAGTGTTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAACCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGTGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGTGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCACTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50.997

99.716

0.509
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472