Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LGM68_RS05010 Genome accession   NZ_CP090561
Coordinates   1188525..1189583 (+) Length   352 a.a.
NCBI ID   WP_343236086.1    Uniprot ID   -
Organism   Xanthomonas citri pv. malvacearum strain CFBP 2530     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1179570..1212300 1188525..1189583 within 0


Gene organization within MGE regions


Location: 1179570..1212300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGM68_RS04980 (LGM68_04980) recG 1179570..1181723 (+) 2154 WP_269356763.1 ATP-dependent DNA helicase RecG -
  LGM68_RS04985 (LGM68_04985) - 1181853..1182791 (+) 939 WP_016848816.1 nucleoside hydrolase -
  LGM68_RS04990 (LGM68_04990) - 1182863..1183105 (+) 243 WP_005911911.1 type B 50S ribosomal protein L31 -
  LGM68_RS04995 (LGM68_04995) - 1183335..1184624 (+) 1290 WP_269340022.1 citrate synthase -
  LGM68_RS05000 (LGM68_05000) - 1184885..1185535 (-) 651 WP_269356764.1 hypothetical protein -
  LGM68_RS05005 (LGM68_05005) - 1185886..1188408 (-) 2523 WP_269356766.1 penicillin-binding protein 1A -
  LGM68_RS05010 (LGM68_05010) comM 1188525..1189583 (+) 1059 WP_343236086.1 pilus assembly protein PilM Machinery gene
  LGM68_RS05015 (LGM68_05015) - 1189583..1190365 (+) 783 WP_269340025.1 PilN domain-containing protein -
  LGM68_RS05020 (LGM68_05020) - 1190362..1191027 (+) 666 WP_003486177.1 type 4a pilus biogenesis protein PilO -
  LGM68_RS05025 (LGM68_05025) - 1191024..1191557 (+) 534 WP_269356770.1 pilus assembly protein PilP -
  LGM68_RS05030 (LGM68_05030) - 1191577..1193478 (+) 1902 WP_033836793.1 type IV pilus secretin PilQ family protein -
  LGM68_RS05035 (LGM68_05035) - 1193540..1194316 (+) 777 WP_078566289.1 hypothetical protein -
  LGM68_RS05040 (LGM68_05040) - 1194470..1195489 (+) 1020 WP_005911878.1 MoxR family ATPase -
  LGM68_RS05045 (LGM68_05045) - 1195510..1196472 (+) 963 WP_033836792.1 DUF58 domain-containing protein -
  LGM68_RS05050 (LGM68_05050) - 1196475..1196936 (+) 462 WP_033836791.1 DUF4381 family protein -
  LGM68_RS05055 (LGM68_05055) - 1196933..1197940 (+) 1008 WP_269356772.1 VWA domain-containing protein -
  LGM68_RS05060 (LGM68_05060) - 1197937..1199742 (+) 1806 WP_269356774.1 VWA domain-containing protein -
  LGM68_RS05065 (LGM68_05065) - 1199739..1201487 (+) 1749 WP_033485648.1 BatD family protein -
  LGM68_RS05070 (LGM68_05070) - 1202371..1203651 (+) 1281 WP_078566287.1 dicarboxylate/amino acid:cation symporter -
  LGM68_RS05075 (LGM68_05075) tkt 1203877..1205877 (+) 2001 WP_269356776.1 transketolase -
  LGM68_RS05080 (LGM68_05080) - 1205984..1206424 (-) 441 WP_033481503.1 hypothetical protein -
  LGM68_RS05085 (LGM68_05085) - 1206394..1206975 (-) 582 WP_223300980.1 alpha/beta fold hydrolase -
  LGM68_RS05090 (LGM68_05090) fhuE 1207372..1209558 (+) 2187 WP_269356779.1 ferric-rhodotorulic acid/ferric-coprogen receptor FhuE -
  LGM68_RS05095 (LGM68_05095) - 1210028..1210513 (+) 486 WP_005917516.1 hypothetical protein -
  LGM68_RS05100 (LGM68_05100) - 1210681..1211136 (-) 456 Protein_1001 M23 family metallopeptidase -
  LGM68_RS05105 (LGM68_05105) - 1211213..1212300 (+) 1088 WP_269338334.1 IS3-like element ISXac2 family transposase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37595.19 Da        Isoelectric Point: 4.3924

>NTDB_id=643475 LGM68_RS05010 WP_343236086.1 1188525..1189583(+) (comM) [Xanthomonas citri pv. malvacearum strain CFBP 2530]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGSRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPSDLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=643475 LGM68_RS05010 WP_343236086.1 1188525..1189583(+) (comM) [Xanthomonas citri pv. malvacearum strain CFBP 2530]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCGACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAGCCGTTTCCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCTGCC
GTGGCAGGGTCGGCGGTGATCACCAAGTTGATTCCGATGCCGTCCGATCTGGACGATAGCGACCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAATA
GCCCGGACATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGC
GGCCTGACCGCCAAGGTAATGGACGTGGAGGCCTTTGCGGTCGAAAACGCCTTCGCCCTGGTTGCCAGCGAATTGCCGGT
AGCCGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCCGGGCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACTGACGAAGTGATGCGCCGTTACGGGCTGACCTATGAAGAG
GCTGGCCTTGCCAAGCGTCAGGGCGGCCTGCCGGAAAGCTACGAGGTCGAAGTGTTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAACCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGTGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGTGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCACTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50.712

99.716

0.506
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472