Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LZ756_RS07540 Genome accession   NZ_CP090547
Coordinates   1582509..1582955 (-) Length   148 a.a.
NCBI ID   WP_020852950.1    Uniprot ID   A0A060H1M4
Organism   Xylella fastidiosa subsp. sandyi strain OC8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1577509..1587955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ756_RS07520 (LZ756_07520) - 1577812..1578222 (-) 411 WP_020852104.1 MerC domain-containing protein -
  LZ756_RS07525 (LZ756_07525) - 1578382..1580427 (+) 2046 WP_024749298.1 TonB-dependent receptor -
  LZ756_RS07530 (LZ756_07530) - 1580969..1581121 (+) 153 WP_155266653.1 hypothetical protein -
  LZ756_RS07535 (LZ756_07535) - 1582164..1582490 (-) 327 WP_024749194.1 pyocin activator PrtN family protein -
  LZ756_RS07540 (LZ756_07540) ssb 1582509..1582955 (-) 447 WP_020852950.1 single-stranded DNA-binding protein Machinery gene
  LZ756_RS07545 (LZ756_07545) - 1582939..1583145 (-) 207 WP_230577747.1 hypothetical protein -
  LZ756_RS13445 - 1583304..1583468 (-) 165 Protein_1472 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  LZ756_RS07555 (LZ756_07555) - 1583561..1584094 (-) 534 WP_020852695.1 pilin -
  LZ756_RS07560 (LZ756_07560) - 1584072..1584233 (-) 162 WP_196242785.1 hypothetical protein -
  LZ756_RS07565 (LZ756_07565) - 1584226..1584492 (-) 267 WP_020853057.1 hypothetical protein -
  LZ756_RS07570 (LZ756_07570) - 1584489..1584767 (-) 279 WP_020853056.1 hypothetical protein -
  LZ756_RS07575 (LZ756_07575) - 1584764..1584985 (-) 222 WP_021358638.1 hypothetical protein -
  LZ756_RS07580 (LZ756_07580) - 1584982..1585431 (-) 450 WP_020852697.1 hypothetical protein -
  LZ756_RS07585 (LZ756_07585) - 1585428..1585897 (-) 470 Protein_1479 DUF1566 domain-containing protein -
  LZ756_RS07590 (LZ756_07590) - 1585894..1586355 (-) 462 WP_024748647.1 hypothetical protein -
  LZ756_RS07595 (LZ756_07595) - 1586349..1586519 (+) 171 WP_155244224.1 hypothetical protein -
  LZ756_RS07600 (LZ756_07600) - 1586654..1587007 (-) 354 WP_234759300.1 hypothetical protein -
  LZ756_RS07605 (LZ756_07605) - 1587070..1587468 (-) 399 WP_020852700.1 hypothetical protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16605.49 Da        Isoelectric Point: 7.3543

>NTDB_id=643403 LZ756_RS07540 WP_020852950.1 1582509..1582955(-) (ssb) [Xylella fastidiosa subsp. sandyi strain OC8]
MARGINKVILVGNLGNEPDIKYTQSGMTITNISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIANQMHMLGGRGEGSSGITPQQRPAKVRNNDKAYAYAGDDFHDDDIPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=643403 LZ756_RS07540 WP_020852950.1 1582509..1582955(-) (ssb) [Xylella fastidiosa subsp. sandyi strain OC8]
ATGGCACGCGGAATTAACAAGGTAATCCTAGTCGGCAACCTGGGGAACGAGCCGGATATCAAATACACCCAAAGCGGCAT
GACGATCACCAACATTAGCCTAGCAACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCCGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTAACCAAATGCACAT
GCTTGGCGGTCGCGGTGAAGGCTCCAGCGGTATCACGCCACAGCAGCGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060H1M4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

42.045

100

0.5
  ssb Neisseria meningitidis MC58

39.306

100

0.459
  ssb Neisseria gonorrhoeae MS11

39.306

100

0.459
  ssb Glaesserella parasuis strain SC1401

42.029

93.243

0.392