Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LOD78_RS09100 Genome accession   NZ_CP090522
Coordinates   1801913..1802308 (-) Length   131 a.a.
NCBI ID   WP_216806347.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1796913..1807308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD78_RS09080 (LOD78_09065) rpsG 1798213..1798683 (-) 471 WP_105182784.1 30S ribosomal protein S7 -
  LOD78_RS09085 (LOD78_09070) rpsL 1798700..1799113 (-) 414 WP_044694023.1 30S ribosomal protein S12 -
  LOD78_RS09090 (LOD78_09075) groL 1799343..1800965 (-) 1623 WP_216806348.1 chaperonin GroEL -
  LOD78_RS09095 (LOD78_09080) groES 1801064..1801345 (-) 282 WP_171989719.1 co-chaperone GroES -
  LOD78_RS09100 (LOD78_09085) ssbA 1801913..1802308 (-) 396 WP_216806347.1 single-stranded DNA-binding protein Machinery gene
  LOD78_RS09105 (LOD78_09090) - 1802390..1803322 (+) 933 WP_274505421.1 alpha/beta hydrolase -
  LOD78_RS09110 (LOD78_09095) ytpR 1803391..1804014 (-) 624 WP_216806345.1 YtpR family tRNA-binding protein -
  LOD78_RS09115 (LOD78_09100) - 1804033..1804989 (-) 957 WP_171989716.1 DUF1002 domain-containing protein -
  LOD78_RS09120 (LOD78_09105) - 1805033..1805353 (-) 321 WP_114866121.1 thioredoxin family protein -
  LOD78_RS09125 (LOD78_09110) - 1805350..1805634 (-) 285 WP_274505422.1 DUF4651 domain-containing protein -
  LOD78_RS09130 (LOD78_09115) pepA 1805847..1806908 (+) 1062 WP_216806344.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14851.70 Da        Isoelectric Point: 5.0026

>NTDB_id=643196 LOD78_RS09100 WP_216806347.1 1801913..1802308(-) (ssbA) [Streptococcus parasuis strain SS17]
MYNKIIAIGRLTAQPELTQTPNGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=643196 LOD78_RS09100 WP_216806347.1 1801913..1802308(-) (ssbA) [Streptococcus parasuis strain SS17]
ATGTATAATAAAATCATTGCAATCGGTCGCTTGACGGCCCAACCGGAACTGACTCAAACGCCAAATGGCAAAAATCTGAC
TCGTGTAACAGTCGCAGTCAATCGCCGTTTCAAGACAGAAAATGGCGAACGTGAGGCAGATTTTCTCAATGTTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTCTCCTATGGCAGCAAGGGTAGTCTGATTTCTATTGACGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACCGAAATCTTAGGTCAATCTTTCCAGCTACTCGAAAGCCGCGCCCA
ACGTGCTATGCGTGAAAATAATACTGGTGATGACCTAGCTGACTTGGTCTTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.809

100

0.748
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

43.363

86.26

0.374
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374