Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   LOD78_RS08875 Genome accession   NZ_CP090522
Coordinates   1757952..1758635 (+) Length   227 a.a.
NCBI ID   WP_274505958.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS17     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1752952..1763635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD78_RS08850 (LOD78_08845) - 1753134..1755059 (+) 1926 WP_274505409.1 heavy metal translocating P-type ATPase -
  LOD78_RS08855 (LOD78_08850) - 1755323..1755886 (+) 564 WP_274505410.1 recombinase family protein -
  LOD78_RS08860 (LOD78_08855) - 1756132..1756215 (+) 84 Protein_1714 integrase -
  LOD78_RS08865 (LOD78_08860) - 1756529..1757071 (+) 543 WP_068562640.1 PBECR4 domain-containing protein -
  LOD78_RS08870 - 1757613..1757774 (+) 162 Protein_1716 multicopper oxidase domain-containing protein -
  LOD78_RS08875 (LOD78_08865) micA 1757952..1758635 (+) 684 WP_274505958.1 response regulator transcription factor Regulator
  LOD78_RS08880 (LOD78_08870) - 1758632..1760029 (+) 1398 WP_274505411.1 ATP-binding protein -
  LOD78_RS08885 (LOD78_08875) - 1760200..1761381 (-) 1182 WP_274505412.1 cytochrome D1 domain-containing protein -
  LOD78_RS08890 (LOD78_08880) - 1761697..1761930 (-) 234 WP_171989918.1 SHOCT domain-containing protein -
  LOD78_RS08895 (LOD78_08885) lgt 1761933..1762817 (-) 885 WP_174846431.1 prolipoprotein diacylglyceryl transferase -
  LOD78_RS08900 (LOD78_08890) - 1762897..1763253 (-) 357 WP_174846430.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25606.67 Da        Isoelectric Point: 5.0348

>NTDB_id=643195 LOD78_RS08875 WP_274505958.1 1757952..1758635(+) (micA) [Streptococcus parasuis strain SS17]
MKILIVDDEASILDIVEAYLSAKGYQVFRALSGNEALTKVDVVQPDLIVLDLMLPGLSGLEVCKKIRGSSTVPIIMLTAK
TAEKDILEGLSLGADDYITKPFSPKELVARVETVLRRVQPEYREEKWSFEEGLLVIYPDRKQVFKQGEEIILTPTEYALL
ALLASHPKRLFSREQLLDAVKGLDFDGTDRVIDTHIKNIRQKIEDDTRNPYFILTAYGMGYRFGGQK

Nucleotide


Download         Length: 684 bp        

>NTDB_id=643195 LOD78_RS08875 WP_274505958.1 1757952..1758635(+) (micA) [Streptococcus parasuis strain SS17]
GTGAAGATTTTAATTGTGGACGACGAAGCAAGCATTCTGGATATCGTGGAAGCCTATTTGAGTGCAAAAGGCTATCAAGT
GTTTCGCGCTTTGAGCGGAAACGAGGCTTTAACAAAGGTTGATGTTGTCCAACCTGACTTGATTGTGTTGGATCTCATGC
TGCCCGGTTTATCTGGCCTCGAAGTCTGTAAAAAAATAAGGGGCTCCTCCACTGTACCGATTATCATGTTGACTGCGAAA
ACAGCCGAAAAAGATATCTTGGAAGGGTTAAGCCTGGGGGCTGATGACTACATCACAAAACCATTCAGCCCGAAAGAGCT
GGTTGCTCGGGTCGAAACCGTTTTACGCCGTGTCCAACCAGAATACCGAGAAGAAAAGTGGTCTTTCGAAGAAGGTTTGC
TGGTTATCTACCCGGATCGAAAACAAGTATTCAAACAAGGTGAAGAAATCATTTTGACCCCGACCGAGTATGCTTTATTA
GCCCTTCTGGCCTCACATCCAAAGCGCCTATTTTCACGGGAACAGCTGCTGGACGCTGTGAAAGGACTCGATTTTGATGG
AACGGATCGGGTGATCGATACCCACATCAAAAATATCCGTCAAAAAATTGAGGACGACACGCGCAACCCCTACTTCATCT
TAACCGCATATGGAATGGGGTATCGATTTGGTGGTCAAAAATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

48.673

99.559

0.485
  vicR Streptococcus mutans UA159

48.458

100

0.485
  scnR Streptococcus mutans UA159

38.865

100

0.392
  covR Lactococcus lactis subsp. lactis strain DGCC12653

38.117

98.238

0.374
  covR Streptococcus salivarius strain HSISS4

37.668

98.238

0.37