Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   LOD78_RS08050 Genome accession   NZ_CP090522
Coordinates   1588960..1590753 (-) Length   597 a.a.
NCBI ID   WP_274505340.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS17     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583960..1595753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD78_RS08030 (LOD78_08025) - 1584863..1585765 (-) 903 WP_274505952.1 ABC transporter permease -
  LOD78_RS08035 (LOD78_08030) opp4B 1585779..1586735 (-) 957 WP_024391408.1 oligopeptide ABC transporter permease -
  LOD78_RS08040 (LOD78_08035) - 1586737..1587678 (-) 942 WP_274505338.1 ATP-binding cassette domain-containing protein -
  LOD78_RS08045 (LOD78_08040) - 1587681..1588700 (-) 1020 WP_274505339.1 ABC transporter ATP-binding protein -
  LOD78_RS08050 (LOD78_08045) oppA 1588960..1590753 (-) 1794 WP_274505340.1 oligopeptide ABC transporter substrate-binding protein Regulator
  LOD78_RS08055 (LOD78_08050) pbp3 1590966..1592207 (+) 1242 WP_274505341.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  LOD78_RS08060 (LOD78_08055) sufB 1592785..1594200 (-) 1416 WP_172036753.1 Fe-S cluster assembly protein SufB -
  LOD78_RS08065 (LOD78_08060) sufU 1594602..1595042 (-) 441 WP_274505342.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 65697.02 Da        Isoelectric Point: 4.1799

>NTDB_id=643191 LOD78_RS08050 WP_274505340.1 1588960..1590753(-) (oppA) [Streptococcus parasuis strain SS17]
MKKTTKLFALAGVTLLSASVLAACGSKSSSSSETAELSFPAEVKQDGTAVAESQLKYAWVSASTSSGLLIDELTENTTDS
TFGGMVDISMFGWDGDRKLDDSGLAKAEFDVDGKKITVSLTGKDYKWSDGEPFTIDDYIFTIKAMASKDYTGVRFDDKFL
NIVGMDEFVAGTASDISGLKKVDDYTVELTVKEMSPSMMYAGGDVPSYVQPEHIYKDIPVAEWESSEYSRTAKLVGMGPW
KIKEIVNGESITYVPNEYYFKGTTPKTGSLKIDIVSPDTIVSEMKAGNYDIAEMPADQLDSYKDASNLNLVGSLESAYEY
ISFNLGKYDEASEKNIMDENAKMNDVKLRQAIAYAIDTKTAGEKLYNGLYHPATSLIISFFGDLHDSEVEGYSYDPDKAN
ELLDEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEINTFYDAIQANDASI
DMYTGGWSTGYDPNPNGLWGETAPFNMSRFVDEKNTELLDAIGSVASFDEKTNLKNYKAWQEYAFEQAFAIPTFESEAIT
AVNKRVKNFDTNYGSASENGIALENIELTADKGVAAE

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=643191 LOD78_RS08050 WP_274505340.1 1588960..1590753(-) (oppA) [Streptococcus parasuis strain SS17]
ATGAAAAAGACGACTAAATTATTTGCTCTAGCGGGTGTAACGCTTCTTTCGGCATCTGTACTTGCTGCGTGTGGTTCTAA
ATCTTCTTCTAGCTCTGAGACAGCAGAGTTATCTTTCCCAGCAGAAGTAAAACAAGATGGTACAGCAGTTGCTGAGTCAC
AATTGAAATATGCATGGGTATCAGCATCAACTTCATCAGGTCTGTTAATTGATGAATTAACAGAGAATACGACTGACTCA
ACCTTTGGTGGAATGGTTGATATTTCAATGTTTGGTTGGGATGGGGATCGTAAATTAGATGATTCTGGTCTTGCAAAAGC
GGAGTTTGATGTTGATGGTAAGAAAATCACTGTTAGCTTGACTGGTAAAGACTATAAGTGGTCTGATGGCGAACCATTTA
CAATTGATGACTATATTTTCACAATTAAAGCAATGGCAAGCAAAGATTACACAGGTGTTCGTTTTGATGATAAATTCTTG
AACATTGTGGGTATGGATGAATTTGTTGCTGGAACTGCTTCAGATATCTCAGGTCTTAAAAAAGTGGACGATTACACTGT
TGAATTGACCGTTAAAGAAATGTCACCGTCAATGATGTATGCTGGTGGTGATGTGCCTTCGTATGTTCAACCTGAACATA
TCTACAAAGATATTCCAGTTGCAGAATGGGAAAGCAGTGAGTACTCACGTACTGCAAAACTTGTCGGTATGGGACCATGG
AAAATCAAAGAAATCGTTAATGGTGAGTCAATCACTTATGTTCCAAATGAATACTACTTCAAAGGGACAACACCAAAAAC
AGGTTCATTGAAGATTGATATTGTATCCCCTGATACAATTGTTTCTGAAATGAAAGCTGGTAACTACGATATTGCAGAAA
TGCCAGCAGATCAGTTGGATTCTTACAAGGATGCCTCAAACCTTAATCTTGTAGGCTCTCTTGAATCTGCATATGAATAC
ATCTCATTCAACCTTGGTAAATATGATGAAGCATCTGAAAAGAATATCATGGATGAAAATGCTAAGATGAATGACGTGAA
ACTTCGTCAAGCGATTGCGTATGCGATTGATACGAAAACGGCTGGTGAGAAACTCTATAATGGACTTTATCACCCAGCAA
CTTCCTTAATCATCTCGTTCTTTGGTGATCTTCATGATTCTGAAGTGGAAGGCTACTCATATGATCCAGATAAGGCTAAT
GAGCTATTAGATGAAGCTGGCTATAAAGATGTTGATGGTGATGGTATTCGTGAAGGCAAAGACGGAAAAGAATTCAAAAT
TACATTTGCTGCTCGTAAACGTACTGAGGCGAACGAAGCACTTGTTCAACAATACATTGCTTGGTGGAAAGAAGTTGGTT
TGAATGTTGAACTGTATACTGGTCGAACTGTAGAAATCAACACATTCTATGACGCAATTCAAGCTAATGATGCGTCTATT
GACATGTATACTGGTGGATGGTCAACTGGTTACGATCCAAACCCTAATGGACTTTGGGGAGAAACTGCACCATTTAACAT
GTCACGTTTTGTAGATGAAAAGAATACTGAGTTATTGGATGCGATTGGTTCTGTTGCTTCATTTGATGAGAAAACAAACT
TGAAGAACTACAAAGCATGGCAAGAATATGCTTTTGAACAAGCGTTTGCTATTCCAACATTTGAATCAGAAGCAATTACT
GCAGTGAATAAGCGCGTTAAAAACTTTGACACTAACTATGGTTCCGCATCAGAAAATGGTATCGCGTTAGAAAACATTGA
ACTCACAGCCGATAAAGGTGTAGCAGCTGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

85.93

100

0.859