Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LZ753_RS08555 | Genome accession | NZ_CP090514 |
| Coordinates | 1867988..1868434 (+) | Length | 148 a.a. |
| NCBI ID | WP_004088866.1 | Uniprot ID | Q87B55 |
| Organism | Xylella fastidiosa subsp. fastidiosa strain Riv13 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1860635..1881785 | 1867988..1868434 | within | 0 |
Gene organization within MGE regions
Location: 1860635..1881785
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ753_RS08510 (LZ753_08510) | - | 1860635..1861150 (-) | 516 | WP_004088839.1 | phage portal protein | - |
| LZ753_RS08515 (LZ753_08515) | - | 1861147..1861383 (-) | 237 | WP_004088842.1 | hypothetical protein | - |
| LZ753_RS08520 (LZ753_08520) | - | 1861460..1863559 (-) | 2100 | WP_004088845.1 | phage terminase large subunit family protein | - |
| LZ753_RS08525 (LZ753_08525) | - | 1863556..1864164 (-) | 609 | WP_004088848.1 | hypothetical protein | - |
| LZ753_RS08530 (LZ753_08530) | - | 1864561..1866030 (-) | 1470 | WP_004088851.1 | VapE domain-containing protein | - |
| LZ753_RS08535 (LZ753_08535) | - | 1866027..1867082 (-) | 1056 | WP_004088854.1 | DNA primase | - |
| LZ753_RS08540 (LZ753_08540) | - | 1867081..1867482 (+) | 402 | WP_004088857.1 | hypothetical protein | - |
| LZ753_RS08545 (LZ753_08545) | - | 1867584..1867757 (-) | 174 | WP_155115078.1 | hypothetical protein | - |
| LZ753_RS08550 (LZ753_08550) | - | 1867732..1868004 (+) | 273 | WP_004088863.1 | DUF5131 family protein | - |
| LZ753_RS08555 (LZ753_08555) | ssb | 1867988..1868434 (+) | 447 | WP_004088866.1 | single-stranded DNA-binding protein | Machinery gene |
| LZ753_RS08560 (LZ753_08560) | - | 1868453..1868728 (+) | 276 | WP_011098179.1 | hypothetical protein | - |
| LZ753_RS08565 (LZ753_08565) | - | 1868728..1869901 (+) | 1174 | Protein_1682 | integrase | - |
| LZ753_RS08570 (LZ753_08570) | - | 1870211..1870414 (+) | 204 | WP_004089756.1 | DUF4102 domain-containing protein | - |
| LZ753_RS08575 (LZ753_08575) | - | 1870484..1870888 (+) | 405 | WP_228762613.1 | hypothetical protein | - |
| LZ753_RS08580 (LZ753_08580) | - | 1870815..1871423 (+) | 609 | WP_161594805.1 | hypothetical protein | - |
| LZ753_RS08585 (LZ753_08585) | - | 1871368..1872822 (-) | 1455 | WP_004089759.1 | class I SAM-dependent methyltransferase | - |
| LZ753_RS08590 (LZ753_08590) | - | 1872819..1873508 (-) | 690 | WP_228446149.1 | restriction endonuclease | - |
| LZ753_RS08595 (LZ753_08595) | - | 1873583..1873792 (+) | 210 | WP_126709098.1 | hypothetical protein | - |
| LZ753_RS08605 (LZ753_08605) | - | 1874026..1874481 (-) | 456 | WP_012382713.1 | type IV pilin protein | - |
| LZ753_RS08610 (LZ753_08610) | - | 1874478..1879043 (-) | 4566 | WP_004089764.1 | pilus assembly protein | - |
| LZ753_RS08615 (LZ753_08615) | - | 1879047..1879541 (-) | 495 | WP_012382714.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| LZ753_RS08620 (LZ753_08620) | - | 1879541..1880797 (-) | 1257 | WP_004089768.1 | PilW family protein | - |
| LZ753_RS08625 (LZ753_08625) | pilV | 1880794..1881276 (-) | 483 | WP_004083567.1 | type IV pilus modification protein PilV | - |
| LZ753_RS08630 (LZ753_08630) | - | 1881273..1881785 (-) | 513 | WP_004089770.1 | Tfp pilus assembly protein FimT/FimU | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16607.50 Da Isoelectric Point: 7.3545
>NTDB_id=643112 LZ753_RS08555 WP_004088866.1 1867988..1868434(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain Riv13]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSKRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGNDGQDRYVTEIIADQMHMLGGRGEGSSGITPQRRPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=643112 LZ753_RS08555 WP_004088866.1 1867988..1868434(+) (ssb) [Xylella fastidiosa subsp. fastidiosa strain Riv13]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGAAACCTGGGAAACGAGCCAGATATTAAATACACCCAAAGCGGCAT
GACGATCACCAGTATTAGCCTAGCGACCAGCAGCAAACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTGGGCGAGATTGCCGCTGAATATCTGCACAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAATTCACCGGCAATGATGGGCAGGACCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGCGAAGGCTCCAGCGGCATCACGCCACAGCGACGACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
40.909 |
100 |
0.486 |
| ssb | Neisseria meningitidis MC58 |
38.15 |
100 |
0.446 |
| ssb | Neisseria gonorrhoeae MS11 |
38.15 |
100 |
0.446 |
| ssb | Glaesserella parasuis strain SC1401 |
42.029 |
93.243 |
0.392 |