Detailed information NTG0643111

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: LZ753_RS06105
• Genome accession: NZ_CP090514
• Coordinates: 1350966..1352096 (+)
• Length: 376 a.a.
• NCBI ID: WP_234502223.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. fastidiosa strain Riv13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1345966..1357096

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ753_RS06085 (LZ753_06085)	-	1346253..1347077 (+)	825	WP_011097969.1	glycosyltransferase family 2 protein	-
LZ753_RS06090 (LZ753_06090)	-	1347711..1348538 (-)	828	WP_012382641.1	glycosyltransferase family 2 protein	-
LZ753_RS06095 (LZ753_06095)	-	1348896..1349108 (-)	213	WP_004087301.1	hypothetical protein	-
LZ753_RS06100 (LZ753_06100)	pilT	1349766..1350800 (+)	1035	WP_004084948.1	type IV pilus twitching motility protein PilT	Machinery gene
LZ753_RS06105 (LZ753_06105)	pilU	1350966..1352096 (+)	1131	WP_234502223.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
LZ753_RS06110 (LZ753_06110)	-	1352789..1353757 (-)	969	WP_004087304.1	YafY family protein	-
LZ753_RS06115 (LZ753_06115)	-	1354606..1355415 (+)	810	WP_004087308.1	DUF481 domain-containing protein	-
LZ753_RS06120 (LZ753_06120)	hemC	1355469..1356386 (-)	918	WP_004087310.1	hydroxymethylbilane synthase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 42505.77 Da
• Isoelectric Point: 6.5026

>NTDB_id=643111 LZ753_RS06105 WP_234502223.1 1350966..1352096(+) (pilU) [Xylella fastidiosa subsp. fastidiosa strain Riv13]
MTTIDFTSLLKLMAHQKASDLFITCGMPPSMKIHGNITPITQVPLTSEQSRDIVFNIMSEAQREEFEKVHECNFAIDITS
IGRFRVNAFYQRNQIGMVLRRIEMSIPTFEKLKLPQVAKELVMEKRGIIIIVGATGSGKSTSMASMINHRNHNSTGHIVT
IEDPIEFIHKHEKCIITQREIGTDTDSWENALKNTLRQAPDVIVIGEVRTQETMDHAISFSETGHLVMCTLYANNANQAI
DRIINFFPEERRSQLLMDLSLNLKGIIAQQLIPSADGKERCLAAEVLRDSRLVQDYIRVGEIHKLKEVMQNHNDLGMTTF
DQSLVELYHSGAINYKEALRHADSQNEVRLRIKLSDGKDAKTLSQGFDGIEIAEMS

Nucleotide

• Length: 1131 bp

>NTDB_id=643111 LZ753_RS06105 WP_234502223.1 1350966..1352096(+) (pilU) [Xylella fastidiosa subsp. fastidiosa strain Riv13]
ATGACTACCATCGATTTCACATCCTTACTTAAGCTGATGGCGCACCAAAAAGCGTCGGATTTATTTATTACCTGTGGAAT
GCCGCCTTCAATGAAGATTCACGGCAATATCACTCCAATCACACAAGTACCGCTGACTTCAGAGCAAAGCCGTGACATAG
TCTTCAATATCATGAGTGAAGCGCAGCGCGAGGAATTCGAGAAGGTCCACGAATGCAACTTCGCAATTGACATCACCAGC
ATTGGTCGCTTCCGTGTCAACGCTTTCTATCAGCGTAACCAAATTGGTATGGTGTTACGCAGAATCGAGATGTCTATTCC
CACCTTCGAAAAACTGAAGCTCCCGCAGGTCGCTAAGGAGCTCGTCATGGAGAAGCGCGGCATCATCATCATCGTTGGTG
CTACGGGTAGTGGTAAATCGACCTCAATGGCATCAATGATCAACCACCGTAATCACAACTCAACAGGACATATCGTCACT
ATCGAAGATCCCATTGAGTTTATTCACAAGCACGAGAAATGCATCATCACCCAACGCGAAATAGGTACCGATACCGACAG
TTGGGAAAATGCCTTGAAAAATACCCTACGCCAAGCCCCAGATGTGATTGTGATTGGTGAAGTGCGTACTCAAGAGACAA
TGGATCATGCCATCTCGTTCTCCGAAACCGGCCATCTGGTCATGTGTACCCTATATGCCAACAACGCCAATCAAGCAATA
GACCGCATTATTAACTTCTTCCCGGAAGAGCGGCGCAGCCAATTACTGATGGATCTGTCGCTGAATCTAAAAGGCATCAT
CGCTCAACAATTGATCCCATCTGCGGATGGTAAAGAGCGCTGTTTAGCAGCGGAAGTTTTGCGCGACAGTCGATTAGTAC
AGGACTACATACGCGTAGGCGAGATCCATAAGCTCAAAGAAGTCATGCAAAACCACAATGATCTTGGAATGACGACATTC
GATCAAAGTCTAGTCGAACTCTATCATAGCGGAGCCATTAACTATAAAGAGGCACTACGCCATGCTGATTCGCAGAACGA
GGTACGCCTGCGTATTAAACTCTCCGATGGGAAAGACGCTAAAACTCTGAGTCAAGGATTCGATGGAATAGAAATTGCAG
AAATGTCATAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (114-273)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	61.308	97.606	0.598
pilU	Acinetobacter baylyi ADP1	59.887	94.149	0.564
pilU	Vibrio cholerae strain A1552	50.562	94.681	0.479
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.209	96.809	0.399