Detailed information NTG0643078

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: LZ754_RS06080
• Genome accession: NZ_CP090511
• Coordinates: 1343293..1344423 (+)
• Length: 376 a.a.
• NCBI ID: WP_234499664.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain Oak 35874
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1338293..1349423

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ754_RS06060 (LZ754_06060)	-	1338604..1339428 (+)	825	WP_004084943.1	glycosyltransferase family 2 protein	-
LZ754_RS06065 (LZ754_06065)	-	1340058..1340885 (-)	828	WP_004084945.1	glycosyltransferase family 2 protein	-
LZ754_RS06070 (LZ754_06070)	-	1341270..1341482 (-)	213	WP_021358439.1	hypothetical protein	-
LZ754_RS06075 (LZ754_06075)	pilT	1342104..1343138 (+)	1035	WP_004084948.1	type IV pilus twitching motility protein PilT	Machinery gene
LZ754_RS06080 (LZ754_06080)	pilU	1343293..1344423 (+)	1131	WP_234499664.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
LZ754_RS06085 (LZ754_06085)	-	1345092..1346060 (-)	969	WP_004084952.1	YafY family protein	-
LZ754_RS06090 (LZ754_06090)	-	1346843..1347652 (+)	810	WP_021358437.1	DUF481 domain-containing protein	-
LZ754_RS06095 (LZ754_06095)	hemC	1347706..1348623 (-)	918	WP_004084955.1	hydroxymethylbilane synthase	-
LZ754_RS06100 (LZ754_06100)	-	1348631..1349389 (-)	759	WP_027700753.1	LytTR family DNA-binding domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 42474.69 Da
• Isoelectric Point: 6.2716

>NTDB_id=643078 LZ754_RS06080 WP_234499664.1 1343293..1344423(+) (pilU) [Xylella fastidiosa subsp. multiplex strain Oak 35874]
MTTIDFTSLLKLMAHQKASDLFITCEMPPSMKIHGNITPITQVPLTSEQSRDIVFNIMSEAQREEFEKVHECNFAIDITS
IGRFRVNAFYQRNQIGMVLRRIEMSIPTFEKLKLPQVAKELVMEKRGIIIIVGATGSGKSTSMASMINHRNHNSTGHIVT
IEDPIEFIHKHERCIITQREIGTDTDSWENALKNTLRQAPDVIVIGEVRTQETMDHAISFSETGHLVMCTLHANNANQAI
DRIINFFPEERRSQLLIDLSLNLKGIIAQQLIPSPDGKERCLAAEVLRDSPLVQDYIRVGEIHKLKEVMQNPNDLGMTTF
DQSLVELYHSGAINYKEALRHADSQNEVRLRIKLSDGKDAKTLSQGFDGVEIAEMS

Nucleotide

• Length: 1131 bp

>NTDB_id=643078 LZ754_RS06080 WP_234499664.1 1343293..1344423(+) (pilU) [Xylella fastidiosa subsp. multiplex strain Oak 35874]
ATGACTACCATCGATTTCACATCCTTACTTAAGCTGATGGCGCACCAAAAAGCGTCGGATTTATTTATTACCTGTGAAAT
GCCGCCTTCAATGAAGATTCACGGCAATATCACTCCAATCACACAAGTACCGCTGACTTCAGAGCAAAGCCGTGACATAG
TCTTCAATATCATGAGTGAAGCGCAGCGCGAGGAATTCGAGAAGGTCCACGAATGCAACTTCGCAATTGACATCACCAGC
ATTGGTCGCTTCCGTGTCAACGCTTTCTATCAGCGTAACCAAATTGGTATGGTGTTACGCAGAATCGAGATGTCTATTCC
CACCTTCGAAAAACTGAAGCTCCCGCAGGTCGCTAAGGAGCTCGTCATGGAGAAGCGCGGCATCATCATCATCGTGGGTG
CCACGGGTAGTGGTAAATCGACCTCAATGGCATCAATGATCAACCACCGTAATCACAACTCAACAGGACATATCGTCACT
ATCGAAGATCCCATTGAGTTTATTCACAAGCACGAGAGATGCATCATCACCCAACGCGAAATAGGTACCGACACCGACAG
TTGGGAAAATGCCTTGAAAAATACCCTACGCCAAGCCCCAGATGTGATTGTGATTGGTGAGGTGCGTACTCAAGAGACAA
TGGATCATGCCATCTCATTCTCCGAAACTGGCCATTTGGTCATGTGTACCCTACATGCCAACAACGCCAATCAAGCAATA
GACCGCATTATTAACTTCTTCCCGGAAGAGCGGCGCAGCCAATTACTGATAGATCTGTCGCTAAATCTAAAAGGCATCAT
CGCTCAACAATTGATCCCATCTCCGGATGGTAAAGAGCGCTGTTTAGCAGCGGAAGTTTTGCGCGACAGTCCATTAGTAC
AGGACTACATACGCGTAGGAGAGATCCATAAACTCAAAGAAGTCATGCAAAACCCCAACGATCTTGGAATGACGACATTC
GATCAAAGCTTGGTCGAACTCTATCATAGCGGAGCCATTAACTATAAAGAGGCACTACGCCATGCTGATTCGCAGAACGA
GGTACGCCTGCGTATTAAACTCTCCGATGGAAAAGACGCTAAAACTCTGAGTCAAGGATTCGATGGAGTGGAAATTGCAG
AAATGTCATAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (111-273)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	61.58	97.606	0.601
pilU	Acinetobacter baylyi ADP1	59.887	94.149	0.564
pilU	Vibrio cholerae strain A1552	51.124	94.681	0.484
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.209	96.809	0.399