Detailed information NTG0643061

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: LZ759_RS05885
• Genome accession: NZ_CP090510
• Coordinates: 1339667..1340797 (+)
• Length: 376 a.a.
• NCBI ID: WP_071869741.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain LA-Y3C
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1334667..1345797

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZ759_RS05865 (LZ759_05865)	-	1334946..1335770 (+)	825	WP_004084943.1	glycosyltransferase family 2 protein	-
LZ759_RS05870 (LZ759_05870)	-	1336400..1337227 (-)	828	WP_004084945.1	glycosyltransferase family 2 protein	-
LZ759_RS05875 (LZ759_05875)	-	1337612..1337824 (-)	213	WP_071869740.1	hypothetical protein	-
LZ759_RS05880 (LZ759_05880)	pilT	1338467..1339501 (+)	1035	WP_004084948.1	type IV pilus twitching motility protein PilT	Machinery gene
LZ759_RS05885 (LZ759_05885)	pilU	1339667..1340797 (+)	1131	WP_071869741.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
LZ759_RS05890 (LZ759_05890)	-	1341490..1342458 (-)	969	WP_234545922.1	YafY family protein	-
LZ759_RS05895 (LZ759_05895)	-	1343241..1344050 (+)	810	WP_021358437.1	DUF481 domain-containing protein	-
LZ759_RS05900 (LZ759_05900)	hemC	1344104..1345021 (-)	918	WP_004084955.1	hydroxymethylbilane synthase	-
LZ759_RS05905 (LZ759_05905)	-	1345029..1345787 (-)	759	WP_027700753.1	LytTR family DNA-binding domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 42506.76 Da
• Isoelectric Point: 6.5563

>NTDB_id=643061 LZ759_RS05885 WP_071869741.1 1339667..1340797(+) (pilU) [Xylella fastidiosa subsp. multiplex strain LA-Y3C]
MTTIDFTSLLKLMAHQKASDLFITCGMPPSMKIHGNITPITQVPLTSEQSRDIVFNIMSEAQREEFEKVHECNFAIDITS
IGRFRVNAFYQRNQIGMVLRRIEMSIPTFEKLKLPQVAKELVMEKRGIIIIVGATGSGKSTSMASMINHRNHNSTGHIVT
IEDPIEFIHKHEKCIITQREIGTDTDSWENALKNTLRQAPDVIVIGEVRTQETMDHAISFSETGHLVMCTLHANNANQAI
DRIINFFPEERRSQLLMDLSLNLKGIIAQQLIPSADGKERCLAAEVLRDSRLVQDYIRVGEIHKLKEVMQNHNDLGMTTF
DQSLVELYHNGAINYKEALRHADSQNEVRLRIKLSDGKDAKTLSQGFDGIEIAEMS

Nucleotide

• Length: 1131 bp

>NTDB_id=643061 LZ759_RS05885 WP_071869741.1 1339667..1340797(+) (pilU) [Xylella fastidiosa subsp. multiplex strain LA-Y3C]
ATGACTACCATCGATTTCACATCCTTACTTAAGCTGATGGCGCACCAAAAAGCGTCGGATTTATTTATTACCTGTGGAAT
GCCGCCTTCAATGAAGATTCACGGCAATATCACTCCAATCACACAAGTACCGCTGACTTCAGAGCAAAGCCGTGACATAG
TCTTCAATATCATGAGTGAAGCGCAGCGCGAGGAATTCGAGAAGGTCCACGAATGCAACTTCGCAATTGACATCACCAGC
ATTGGTCGCTTCCGTGTCAACGCTTTCTATCAGCGTAACCAAATTGGTATGGTGTTACGCAGAATCGAGATGTCTATTCC
CACCTTCGAAAAACTGAAGCTCCCGCAGGTCGCTAAGGAGCTCGTCATGGAGAAGCGCGGCATCATCATCATCGTTGGTG
CTACGGGTAGTGGTAAATCGACCTCAATGGCATCAATGATCAACCACCGTAATCACAACTCAACAGGACATATCGTCACT
ATCGAAGATCCCATTGAGTTTATTCACAAGCACGAGAAATGCATCATCACCCAACGCGAAATAGGTACCGATACCGACAG
TTGGGAAAATGCCTTGAAAAATACCCTACGCCAAGCCCCAGATGTGATTGTGATTGGTGAAGTGCGTACTCAAGAGACAA
TGGATCATGCCATCTCGTTCTCCGAAACCGGCCATCTGGTCATGTGTACCCTACATGCCAACAACGCCAATCAAGCAATA
GACCGCATTATTAACTTCTTCCCGGAAGAGCGGCGCAGCCAATTACTGATGGATCTGTCGCTGAATCTAAAAGGCATCAT
CGCTCAACAATTGATCCCATCTGCGGATGGTAAAGAGCGCTGTTTAGCAGCGGAAGTTTTGCGCGACAGTCGATTAGTAC
AGGACTACATACGCGTAGGCGAGATCCATAAGCTCAAAGAAGTCATGCAAAACCACAATGATCTTGGAATGACGACATTC
GATCAAAGTCTAGTCGAACTCTATCATAACGGAGCCATTAACTATAAAGAGGCACTACGCCATGCTGATTCGCAGAACGA
GGTACGCCTGCGTATTAAACTCTCCGATGGGAAAGACGCTAAAACTCTGAGTCAAGGATTCGATGGAATAGAAATTGCAG
AAATGTCATAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (114-273)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	61.58	97.606	0.601
pilU	Acinetobacter baylyi ADP1	60.169	94.149	0.566
pilU	Vibrio cholerae strain A1552	50.843	94.681	0.481
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.484	96.809	0.402