Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LZ758_RS08060 Genome accession   NZ_CP090508
Coordinates   1717855..1718349 (-) Length   164 a.a.
NCBI ID   WP_004089231.1    Uniprot ID   Q87DQ5
Organism   Xylella fastidiosa subsp. morus strain Riv11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1712855..1723349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ758_RS08040 (LZ758_08040) gloA 1713180..1713707 (+) 528 WP_052151239.1 lactoylglutathione lyase -
  LZ758_RS08045 (LZ758_08045) - 1713868..1715064 (-) 1197 WP_038229878.1 cation:proton antiporter -
  LZ758_RS08050 (LZ758_08050) - 1715377..1716207 (-) 831 WP_080679699.1 methyltransferase domain-containing protein -
  LZ758_RS08055 (LZ758_08055) - 1717416..1717580 (-) 165 WP_162832860.1 hypothetical protein -
  LZ758_RS08060 (LZ758_08060) ssb 1717855..1718349 (-) 495 WP_004089231.1 single-stranded DNA-binding protein Machinery gene
  LZ758_RS08065 (LZ758_08065) - 1718600..1719601 (+) 1002 WP_038229804.1 polyprenyl synthetase family protein -
  LZ758_RS08070 (LZ758_08070) cyoA 1720070..1721029 (+) 960 WP_027700012.1 ubiquinol oxidase subunit II -
  LZ758_RS08075 (LZ758_08075) cyoB 1721023..1723020 (+) 1998 WP_027700013.1 cytochrome o ubiquinol oxidase subunit I -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18227.20 Da        Isoelectric Point: 5.9527

>NTDB_id=643041 LZ758_RS08060 WP_004089231.1 1717855..1718349(-) (ssb) [Xylella fastidiosa subsp. morus strain Riv11]
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKDGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQTRQPSQSPQSSPPPMDDFADD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=643041 LZ758_RS08060 WP_004089231.1 1717855..1718349(-) (ssb) [Xylella fastidiosa subsp. morus strain Riv11]
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAATCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTTCGTAAGGACAAGGATGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATTCGCTATGACAAGTTCACTGGCCAGGATGGCCAAGAGCGCTATGTTACAGAGATTGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGTGATGGTGGCGGTATGGGCGGGGGTGGTGAGCGCCCACAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGACCCGTCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87DQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.153

100

0.53
  ssb Glaesserella parasuis strain SC1401

46.927

100

0.512
  ssb Neisseria meningitidis MC58

41.618

100

0.439
  ssb Neisseria gonorrhoeae MS11

41.04

100

0.433