Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OHL99_RS03485 Genome accession   NZ_CP107270
Coordinates   658990..659514 (+) Length   174 a.a.
NCBI ID   WP_003688219.1    Uniprot ID   B4RKU5
Organism   Neisseria gonorrhoeae strain 1081168     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 653990..664514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHL99_RS03455 (OHL99_03455) - 654388..655206 (+) 819 WP_263932743.1 opacity family porin -
  OHL99_RS03460 (OHL99_03460) - 655220..655360 (+) 141 WP_235272047.1 hypothetical protein -
  OHL99_RS03465 (OHL99_03465) - 655574..656064 (+) 491 Protein_669 REP-associated tyrosine transposase -
  OHL99_RS03470 (OHL99_03470) - 656101..656367 (+) 267 Protein_670 transposase -
  OHL99_RS03475 (OHL99_03475) - 656869..657492 (+) 624 WP_003688215.1 lytic transglycosylase domain-containing protein -
  OHL99_RS03480 (OHL99_03480) - 657604..658986 (+) 1383 WP_003698298.1 MFS transporter -
  OHL99_RS03485 (OHL99_03485) ssb 658990..659514 (+) 525 WP_003688219.1 single-stranded DNA-binding protein Machinery gene
  OHL99_RS03490 (OHL99_03490) - 659887..660810 (+) 924 WP_003699810.1 DMT family transporter -
  OHL99_RS03495 (OHL99_03495) fumC 660875..662263 (-) 1389 WP_003695070.1 class II fumarate hydratase -
  OHL99_RS03500 (OHL99_03500) recP/tkt 662407..664386 (-) 1980 WP_003688227.1 transketolase Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19475.68 Da        Isoelectric Point: 5.8313

>NTDB_id=642954 OHL99_RS03485 WP_003688219.1 658990..659514(+) (ssb) [Neisseria gonorrhoeae strain 1081168]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYDEGYGQNQEAYQRPAQQSRQPAPDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=642954 OHL99_RS03485 WP_003688219.1 658990..659514(+) (ssb) [Neisseria gonorrhoeae strain 1081168]
ATGTCATTGAACAAAGTCATCCTTATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCAGT
GTGTAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAGCGCGTAGAGCGCACCGAATGGCACAACA
TCACGATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATCTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGCACCGCTTACGATATTGTCGCCAATGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGCGCGCCTTACGATGAAGGTTACGGTCAGAATCAGGAGGCTTACCAACGCCCCGCTC
AGCAAAGCCGGCAGCCCGCTCCCGACGCGCCGTCCCATCCCCAAGAAGCACCCGCCGCGCCGCGCCGCCAACCCGTGCCG
GCCGCCGCCCCGGTCGAGGACATTGACGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4RKU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

99.425

100

0.994
  ssb Neisseria meningitidis MC58

98.276

100

0.983
  ssb Vibrio cholerae strain A1552

47.486

100

0.489
  ssb Glaesserella parasuis strain SC1401

43.889

100

0.454