Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | IHC88_RS01525 | Genome accession | NZ_CP090498 |
| Coordinates | 304063..304611 (+) | Length | 182 a.a. |
| NCBI ID | WP_044174221.1 | Uniprot ID | A0A1Q9H2L1 |
| Organism | Photobacterium damselae subsp. damselae strain CSP DAM2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 299063..309611
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHC88_RS01515 (IHC88_01515) | - | 299067..300818 (-) | 1752 | WP_237033326.1 | PglL family O-oligosaccharyltransferase | - |
| IHC88_RS01520 (IHC88_01520) | uvrA | 300971..303796 (-) | 2826 | WP_237033327.1 | excinuclease ABC subunit UvrA | - |
| IHC88_RS01525 (IHC88_01525) | ssb | 304063..304611 (+) | 549 | WP_044174221.1 | single-stranded DNA-binding protein | Machinery gene |
| IHC88_RS01530 (IHC88_01530) | csrD | 304762..306702 (+) | 1941 | WP_065170866.1 | RNase E specificity factor CsrD | - |
| IHC88_RS01535 (IHC88_01535) | - | 306867..308318 (+) | 1452 | WP_237033328.1 | PilN domain-containing protein | - |
| IHC88_RS01540 (IHC88_01540) | pilO | 308315..308950 (+) | 636 | WP_065170864.1 | type 4a pilus biogenesis protein PilO | - |
| IHC88_RS01545 (IHC88_01545) | - | 308943..309266 (+) | 324 | WP_065170863.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20101.25 Da Isoelectric Point: 4.9059
>NTDB_id=642930 IHC88_RS01525 WP_044174221.1 304063..304611(+) (ssb) [Photobacterium damselae subsp. damselae strain CSP DAM2]
MASRGVNKVILVGNLGNDPEVRYMPNGGAVANITIATSETWRDKATGENREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEIVVQGFNGVMQMLGGRQNQGGQGMGAPMGGQQQQGGWGQPQQPAAQNFAPQQQQQQAPA
QQPAPQQQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGNDPEVRYMPNGGAVANITIATSETWRDKATGENREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEIVVQGFNGVMQMLGGRQNQGGQGMGAPMGGQQQQGGWGQPQQPAAQNFAPQQQQQQAPA
QQPAPQQQYNEPPMDFDDDIPF
Nucleotide
Download Length: 549 bp
>NTDB_id=642930 IHC88_RS01525 WP_044174221.1 304063..304611(+) (ssb) [Photobacterium damselae subsp. damselae strain CSP DAM2]
ATGGCCAGTCGTGGCGTAAACAAAGTTATCCTAGTGGGTAACCTAGGAAATGATCCTGAAGTTCGTTACATGCCAAATGG
CGGTGCGGTTGCAAACATTACTATTGCAACTTCAGAAACTTGGCGTGATAAAGCAACCGGCGAAAATCGTGAAAAAACTG
AATGGCACCGTGTGGTTCTATTTGGCAAATTAGCCGAAGTTGCTGGTGAATACCTACGTAAAGGTTCTCAAGTATACATT
GAGGGTCAGCTACAAACTCGTAAGTGGCAGAACCAACAGGGCCAAGATCAGTACACTACAGAAATCGTAGTACAAGGCTT
TAACGGCGTTATGCAAATGTTGGGTGGCCGTCAAAACCAAGGTGGTCAAGGTATGGGCGCTCCTATGGGCGGTCAACAGC
AGCAAGGCGGTTGGGGTCAACCACAACAGCCTGCAGCACAAAACTTTGCTCCACAACAACAGCAGCAACAAGCTCCAGCT
CAACAACCTGCACCTCAGCAGCAGTACAATGAGCCACCAATGGACTTCGACGACGATATTCCATTCTAA
ATGGCCAGTCGTGGCGTAAACAAAGTTATCCTAGTGGGTAACCTAGGAAATGATCCTGAAGTTCGTTACATGCCAAATGG
CGGTGCGGTTGCAAACATTACTATTGCAACTTCAGAAACTTGGCGTGATAAAGCAACCGGCGAAAATCGTGAAAAAACTG
AATGGCACCGTGTGGTTCTATTTGGCAAATTAGCCGAAGTTGCTGGTGAATACCTACGTAAAGGTTCTCAAGTATACATT
GAGGGTCAGCTACAAACTCGTAAGTGGCAGAACCAACAGGGCCAAGATCAGTACACTACAGAAATCGTAGTACAAGGCTT
TAACGGCGTTATGCAAATGTTGGGTGGCCGTCAAAACCAAGGTGGTCAAGGTATGGGCGCTCCTATGGGCGGTCAACAGC
AGCAAGGCGGTTGGGGTCAACCACAACAGCCTGCAGCACAAAACTTTGCTCCACAACAACAGCAGCAACAAGCTCCAGCT
CAACAACCTGCACCTCAGCAGCAGTACAATGAGCCACCAATGGACTTCGACGACGATATTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
77.473 |
100 |
0.775 |
| ssb | Glaesserella parasuis strain SC1401 |
57.527 |
100 |
0.588 |
| ssb | Neisseria meningitidis MC58 |
46.739 |
100 |
0.473 |
| ssb | Neisseria gonorrhoeae MS11 |
46.739 |
100 |
0.473 |