Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NDN54_RS03260 Genome accession   NZ_CP107266
Coordinates   614916..615440 (+) Length   174 a.a.
NCBI ID   WP_003688219.1    Uniprot ID   B4RKU5
Organism   Neisseria gonorrhoeae strain 9112     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 609916..620440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN54_RS03235 (NDN54_03235) - 610452..611138 (+) 687 WP_265504329.1 opacity family porin -
  NDN54_RS03240 (NDN54_03240) - 611500..611990 (+) 491 Protein_630 REP-associated tyrosine transposase -
  NDN54_RS03245 (NDN54_03245) - 612027..612293 (+) 267 Protein_631 transposase -
  NDN54_RS03250 (NDN54_03250) - 612795..613418 (+) 624 WP_003688215.1 lytic transglycosylase domain-containing protein -
  NDN54_RS03255 (NDN54_03255) - 613530..614912 (+) 1383 WP_003688217.1 MFS transporter -
  NDN54_RS03260 (NDN54_03260) ssb 614916..615440 (+) 525 WP_003688219.1 single-stranded DNA-binding protein Machinery gene
  NDN54_RS03265 (NDN54_03265) - 615813..616736 (+) 924 WP_025455877.1 DMT family transporter -
  NDN54_RS03270 (NDN54_03270) fumC 616801..618189 (-) 1389 WP_003695070.1 class II fumarate hydratase -
  NDN54_RS03275 (NDN54_03275) recP/tkt 618333..620312 (-) 1980 WP_003688227.1 transketolase Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19475.68 Da        Isoelectric Point: 5.8313

>NTDB_id=642883 NDN54_RS03260 WP_003688219.1 614916..615440(+) (ssb) [Neisseria gonorrhoeae strain 9112]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYDEGYGQNQEAYQRPAQQSRQPAPDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=642883 NDN54_RS03260 WP_003688219.1 614916..615440(+) (ssb) [Neisseria gonorrhoeae strain 9112]
ATGTCATTGAACAAAGTCATCCTTATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCAGT
GTGTAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAGCGCGTAGAGCGCACCGAATGGCACAACA
TCACGATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATCTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGCACCGCTTACGATATTGTCGCCAATGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGCGCGCCTTACGATGAAGGTTACGGTCAGAATCAGGAGGCTTACCAACGCCCCGCTC
AGCAAAGTCGGCAGCCCGCTCCCGACGCGCCGTCCCATCCCCAAGAAGCACCCGCCGCGCCGCGCCGCCAACCCGTGCCG
GCCGCCGCCCCGGTCGAGGACATTGACGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4RKU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

99.425

100

0.994
  ssb Neisseria meningitidis MC58

98.276

100

0.983
  ssb Vibrio cholerae strain A1552

47.486

100

0.489
  ssb Glaesserella parasuis strain SC1401

43.889

100

0.454