Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LZ683_RS27395 Genome accession   NZ_CP090445
Coordinates   5849920..5850468 (-) Length   182 a.a.
NCBI ID   WP_003064700.1    Uniprot ID   A0A5S4SNL5
Organism   Comamonas testosteroni strain X13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5844920..5855468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ683_RS27375 (LZ683_27340) - 5845536..5846948 (-) 1413 WP_275053764.1 sulfatase-like hydrolase/transferase -
  LZ683_RS27380 (LZ683_27345) - 5846920..5848005 (-) 1086 WP_275053765.1 serine hydrolase -
  LZ683_RS27385 - 5848172..5848870 (-) 699 WP_275053766.1 pilin -
  LZ683_RS27390 (LZ683_27360) - 5848885..5849604 (-) 720 WP_182285091.1 FHA domain-containing protein -
  LZ683_RS27395 (LZ683_27365) ssb 5849920..5850468 (-) 549 WP_003064700.1 single-stranded DNA-binding protein Machinery gene
  LZ683_RS27400 (LZ683_27370) - 5850729..5851901 (-) 1173 WP_275054861.1 MFS transporter -
  LZ683_RS27405 (LZ683_27375) uvrA 5852128..5855196 (+) 3069 WP_275053767.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20057.22 Da        Isoelectric Point: 5.9603

>NTDB_id=642502 LZ683_RS27395 WP_003064700.1 5849920..5850468(-) (ssb) [Comamonas testosteroni strain X13]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENREATEWHRVVFNGKLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADAMQMLGSRQGGGQQQGGYGSDDGYGESSYEAPRRQAPAPMQQRPAPAPMQQRPAPA
PMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=642502 LZ683_RS27395 WP_003064700.1 5849920..5850468(-) (ssb) [Comamonas testosteroni strain X13]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGTGACCCTGAAATGCGCACCTTCCCCAGCGGCGATCA
GGTGGCCAATGTGACCATCGCCACCACAGACCGCTGGCGCGACAAGAACACCGGCGAGAACCGCGAAGCCACCGAATGGC
ACCGCGTGGTCTTCAACGGCAAACTGGCCGAAATCGTGGGTCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGTGCCGACGCCATGCA
GATGCTGGGCAGCCGCCAGGGTGGTGGTCAGCAGCAAGGCGGCTATGGCAGCGATGACGGCTATGGCGAAAGCAGCTACG
AAGCACCCCGCCGTCAGGCTCCCGCTCCCATGCAGCAGCGCCCCGCACCGGCACCCATGCAGCAGCGTCCTGCTCCTGCA
CCCATGGCTCCTCCCCCCCAGCGTGCAGCTTCGGGGTTTGACGACATGGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4SNL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.886

100

0.571
  ssb Glaesserella parasuis strain SC1401

51.562

100

0.544
  ssb Neisseria gonorrhoeae MS11

47.514

99.451

0.473
  ssb Neisseria meningitidis MC58

44.565

100

0.451