Detailed information NTG0642475

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LZZ50_RS17370
• Genome accession: NZ_CP090441
• Coordinates: 4122045..4123439 (+)
• Length: 464 a.a.
• NCBI ID: WP_016901261.1
• Uniprot ID: -
• Organism: Xanthomonas arboricola strain YchA
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4117045..4128439

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZZ50_RS17355 (LZZ50_17355)	sucD	4117938..4118813 (-)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-
LZZ50_RS17360 (LZZ50_17360)	sucC	4118838..4120007 (-)	1170	WP_039519379.1	ADP-forming succinate--CoA ligase subunit beta	-
LZZ50_RS17365 (LZZ50_17365)	-	4120239..4121852 (+)	1614	WP_039512337.1	HAMP domain-containing sensor histidine kinase	-
LZZ50_RS17370 (LZZ50_17370)	pilR	4122045..4123439 (+)	1395	WP_016901261.1	sigma-54 dependent transcriptional regulator	Regulator
LZZ50_RS17375 (LZZ50_17375)	pilB	4123653..4125389 (-)	1737	WP_245102984.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LZZ50_RS17380 (LZZ50_17380)	-	4125424..4126950 (-)	1527	WP_342370390.1	hypothetical protein	-
LZZ50_RS17385 (LZZ50_17385)	-	4126920..4127549 (-)	630	WP_245102989.1	hypothetical protein	-

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50204.60 Da
• Isoelectric Point: 6.5112

>NTDB_id=642475 LZZ50_RS17370 WP_016901261.1 4122045..4123439(+) (pilR) [Xanthomonas arboricola strain YchA]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=642475 LZZ50_RS17370 WP_016901261.1 4122045..4123439(+) (pilR) [Xanthomonas arboricola strain YchA]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAATAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATTGAACTGGTTACCGAAATCGCCAAGCATTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGTGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAGCTGAATAACCGCGACCGCCCTGCCCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGATTCCAGTGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTAGGCAAGGAGCTGGTCGCGCGCACCATCCACGAACAGGGCGC
ACGCGCGGCCGGCCCGTTCGTGCCGGTCAACTGTGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACGCTGTTTCTGGAC
GAGGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTGGGCGC
CTCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAGAACCTGGGCGATCTGGTCTCCGACGGCCGTT
TTCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCGCATAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCCGCGCTCGA
CGCGCTGGACCAATATGGCTTTCCCGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACAGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTGGCCGCCACCCCCGGCAGCGCCGCC
GTCGAACCCCGCGAAGCGGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCTTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCACTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.067	99.784	0.629
pilR	Acinetobacter baumannii strain A118	48.922	100	0.489