Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   LY387_RS09485 Genome accession   NZ_CP090438
Coordinates   2063847..2064440 (-) Length   197 a.a.
NCBI ID   WP_128649940.1    Uniprot ID   -
Organism   Vibrio maritimus strain BH16     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2058847..2069440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY387_RS09465 - 2059001..2060317 (-) 1317 WP_234493890.1 DUF945 family protein -
  LY387_RS09470 - 2060428..2062398 (+) 1971 WP_234493891.1 ATP-binding protein -
  LY387_RS09475 - 2062391..2062888 (+) 498 WP_234493892.1 response regulator -
  LY387_RS09480 - 2063195..2063740 (+) 546 WP_234493893.1 hypothetical protein -
  LY387_RS09485 tfoX 2063847..2064440 (-) 594 WP_128649940.1 TfoX/Sxy family DNA transformation protein Regulator
  LY387_RS09490 - 2064809..2065732 (+) 924 WP_234493894.1 HDOD domain-containing protein -
  LY387_RS09495 - 2065778..2066683 (+) 906 WP_234493895.1 lysine exporter LysO family protein -
  LY387_RS09500 - 2066775..2067290 (+) 516 WP_234493896.1 hypothetical protein -
  LY387_RS09505 panP 2067501..2069144 (+) 1644 WP_234493897.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22808.15 Da        Isoelectric Point: 9.6768

>NTDB_id=642439 LY387_RS09485 WP_128649940.1 2063847..2064440(-) (tfoX) [Vibrio maritimus strain BH16]
MIEQSFYDYTTQFGESQKRSMFGGTGLFKEGAMYALISNDKVFIRGGKGLDAQLHELQCEKFRHVKKQSTATVNYYDITN
LYNQQAPVLKDLVRQSIENSVDQHCSKNSVENRRLRDLPNMQLTLERMVKKSGIQDVKTFLELGAPRVFNRVKRTYGNDV
DLKLLWKFAGAVDGVHWKLIQDPMKQRLLEHCSKIEQ

Nucleotide


Download         Length: 594 bp        

>NTDB_id=642439 LY387_RS09485 WP_128649940.1 2063847..2064440(-) (tfoX) [Vibrio maritimus strain BH16]
ATGATAGAGCAATCTTTTTACGACTACACGACTCAATTTGGCGAATCGCAAAAACGTTCGATGTTTGGTGGCACTGGGCT
CTTCAAGGAAGGCGCCATGTATGCACTGATTAGTAACGACAAAGTGTTCATCCGCGGTGGAAAAGGACTGGATGCTCAGT
TGCACGAGCTGCAATGCGAGAAATTTCGTCATGTAAAAAAACAATCAACAGCAACGGTAAACTATTACGACATAACGAAT
CTGTACAACCAGCAAGCTCCTGTGCTCAAAGATTTGGTTAGACAGTCCATCGAAAACTCAGTCGATCAGCACTGTAGTAA
GAATTCAGTCGAGAATAGGCGATTGAGGGACTTGCCTAACATGCAGCTCACATTAGAGCGCATGGTGAAAAAGTCGGGGA
TTCAAGATGTTAAAACGTTCTTAGAGTTAGGCGCGCCACGTGTTTTCAATAGAGTGAAACGCACGTACGGCAACGATGTT
GACCTTAAGCTGTTATGGAAGTTTGCGGGTGCCGTTGATGGCGTGCATTGGAAACTGATTCAAGATCCAATGAAACAGAG
ACTTTTGGAGCATTGCTCGAAGATAGAGCAGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(9-99)

TfoX C-terminal domain (TfoX_C)

(112-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

63.402

98.477

0.624
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

63.402

98.477

0.624
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

63.402

98.477

0.624
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

63.402

98.477

0.624
  tfoX Vibrio cholerae strain A1552

63.402

98.477

0.624
  tfoX Vibrio parahaemolyticus RIMD 2210633

61.458

97.462

0.599
  tfoX Vibrio campbellii strain DS40M4

59.896

97.462

0.584
  tfoX Aliivibrio fischeri ES114

54.45

96.954

0.528