Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LZP85_RS19165 Genome accession   NZ_CP090431
Coordinates   3728031..3728531 (-) Length   166 a.a.
NCBI ID   WP_025907886.1    Uniprot ID   -
Organism   Priestia flexa strain DMP08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3723031..3733531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZP85_RS19145 (LZP85_19145) rplI 3724189..3724638 (-) 450 WP_025907889.1 50S ribosomal protein L9 -
  LZP85_RS19150 (LZP85_19150) - 3724635..3726608 (-) 1974 WP_119542886.1 DHH family phosphoesterase -
  LZP85_RS19155 (LZP85_19155) - 3726647..3727594 (-) 948 WP_226639115.1 YybS family protein -
  LZP85_RS19160 (LZP85_19160) rpsR 3727730..3727969 (-) 240 WP_013059913.1 30S ribosomal protein S18 -
  LZP85_RS19165 (LZP85_19165) ssbA 3728031..3728531 (-) 501 WP_025907886.1 single-stranded DNA-binding protein Machinery gene
  LZP85_RS19170 (LZP85_19170) rpsF 3728576..3728863 (-) 288 WP_025907885.1 30S ribosomal protein S6 -
  LZP85_RS19175 (LZP85_19175) ychF 3729022..3730122 (-) 1101 WP_025907884.1 redox-regulated ATPase YchF -
  LZP85_RS19180 (LZP85_19180) - 3730261..3730458 (-) 198 WP_025907883.1 DUF951 domain-containing protein -
  LZP85_RS19185 (LZP85_19185) - 3730455..3731366 (-) 912 WP_206833320.1 mechanosensitive ion channel family protein -
  LZP85_RS19190 (LZP85_19190) - 3731427..3732443 (-) 1017 WP_119542884.1 hypothetical protein -
  LZP85_RS19195 (LZP85_19195) yyaC 3732528..3733148 (+) 621 WP_119542883.1 spore protease YyaC -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18182.93 Da        Isoelectric Point: 4.7821

>NTDB_id=642395 LZP85_RS19165 WP_025907886.1 3728031..3728531(-) (ssbA) [Priestia flexa strain DMP08]
MMNRVILVGRLTKDPELRYTPNGAAVATFTLAVNRAFTNQQGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRLQSR
SYEGQDGRRVYVTEVVAESVQFLEPKSGGGDMQRNNFANTGGSGQGSPFGDNQNRNSGNQGYTRVDNDPFANNGETIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=642395 LZP85_RS19165 WP_025907886.1 3728031..3728531(-) (ssbA) [Priestia flexa strain DMP08]
ATGATGAATCGCGTAATTCTCGTAGGACGCTTGACGAAAGATCCTGAATTACGTTATACCCCCAATGGAGCTGCAGTTGC
AACATTCACGCTAGCAGTAAACCGCGCATTTACAAATCAACAGGGTGAACGTGAGGCAGACTTTATTAACTGTGTCGTAT
GGCGTCGTCCTGCTGAAAATGTAGCAAACTTTTTGAAAAAAGGTAGTTTAGCTGGTGTTGATGGACGTTTGCAATCTCGT
AGTTATGAAGGACAAGACGGTCGTCGAGTTTATGTAACAGAGGTTGTGGCAGAAAGTGTGCAATTCTTAGAACCAAAAAG
TGGTGGCGGGGATATGCAACGCAATAACTTTGCTAACACTGGTGGATCTGGACAAGGCTCTCCATTTGGAGATAATCAGA
ACCGTAACTCAGGTAATCAAGGTTATACTCGCGTTGATAATGATCCATTTGCAAATAATGGTGAAACAATCGACATCTCT
GATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72

100

0.759
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.596
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

63.855

0.404
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.361