Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   LZP85_RS15175 Genome accession   NZ_CP090431
Coordinates   2947605..2947916 (-) Length   103 a.a.
NCBI ID   WP_025911556.1    Uniprot ID   -
Organism   Priestia flexa strain DMP08     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2942605..2952916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZP85_RS15140 (LZP85_15140) - 2944170..2944991 (+) 822 WP_119543436.1 YqhG family protein -
  LZP85_RS15145 (LZP85_15145) - 2945029..2945220 (-) 192 WP_025911548.1 YqzE family protein -
  LZP85_RS15150 (LZP85_15150) - 2945366..2945992 (+) 627 WP_119543435.1 cupin domain-containing protein -
  LZP85_RS15155 (LZP85_15155) comGG 2946043..2946462 (-) 420 WP_119543434.1 competence type IV pilus minor pilin ComGG -
  LZP85_RS15160 (LZP85_15160) comGF 2946425..2946853 (-) 429 WP_119543481.1 competence type IV pilus minor pilin ComGF -
  LZP85_RS15165 (LZP85_15165) - 2946850..2947185 (-) 336 WP_025911553.1 type II secretion system protein -
  LZP85_RS15170 (LZP85_15170) comGD 2947169..2947603 (-) 435 WP_076512137.1 competence type IV pilus minor pilin ComGD -
  LZP85_RS15175 (LZP85_15175) comGC 2947605..2947916 (-) 312 WP_025911556.1 competence type IV pilus major pilin ComGC Machinery gene
  LZP85_RS15180 (LZP85_15180) comGB 2947930..2948988 (-) 1059 WP_025911558.1 competence type IV pilus assembly protein ComGB -
  LZP85_RS15185 (LZP85_15185) comGA 2948969..2950027 (-) 1059 WP_025911559.1 competence type IV pilus ATPase ComGA Machinery gene
  LZP85_RS15190 (LZP85_15190) - 2950244..2950627 (-) 384 WP_119543432.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  LZP85_RS15195 (LZP85_15195) - 2950907..2951146 (+) 240 WP_025911561.1 DUF2626 domain-containing protein -
  LZP85_RS15200 (LZP85_15200) - 2951190..2951822 (-) 633 WP_025911563.1 MBL fold metallo-hydrolase -
  LZP85_RS15205 (LZP85_15205) - 2952019..2952192 (+) 174 WP_025911564.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11017.88 Da        Isoelectric Point: 5.7969

>NTDB_id=642374 LZP85_RS15175 WP_025911556.1 2947605..2947916(-) (comGC) [Priestia flexa strain DMP08]
MLKNEKGFTLIEMLIVMLVITVLLLIMVPNVLKHNAVINNKGCSALVKTVEAQVQVYELENGTKPTLNELESGGYLKEGT
VCPNGSKITIGTDGRVSASDGNS

Nucleotide


Download         Length: 312 bp        

>NTDB_id=642374 LZP85_RS15175 WP_025911556.1 2947605..2947916(-) (comGC) [Priestia flexa strain DMP08]
ATGTTAAAAAATGAGAAAGGTTTTACTTTAATTGAGATGCTCATTGTTATGTTAGTTATTACAGTGCTATTGCTTATTAT
GGTGCCAAATGTATTAAAGCATAACGCTGTTATTAACAATAAAGGATGCTCGGCTTTAGTGAAAACAGTGGAAGCACAAG
TGCAGGTGTATGAGCTTGAAAACGGAACAAAGCCTACTTTAAACGAGCTTGAAAGCGGAGGATACTTAAAAGAAGGAACG
GTGTGTCCAAATGGTTCGAAAATTACAATAGGTACGGATGGACGCGTATCAGCGAGTGATGGAAACTCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

53.684

92.233

0.495
  comGC Lactococcus lactis subsp. cremoris KW2

47.5

77.67

0.369
  comGC Staphylococcus aureus MW2

40.86

90.291

0.369
  comGC Staphylococcus aureus N315

40.86

90.291

0.369