Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   LZP85_RS15185 Genome accession   NZ_CP090431
Coordinates   2948969..2950027 (-) Length   352 a.a.
NCBI ID   WP_025911559.1    Uniprot ID   -
Organism   Priestia flexa strain DMP08     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2943969..2955027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZP85_RS15140 (LZP85_15140) - 2944170..2944991 (+) 822 WP_119543436.1 YqhG family protein -
  LZP85_RS15145 (LZP85_15145) - 2945029..2945220 (-) 192 WP_025911548.1 YqzE family protein -
  LZP85_RS15150 (LZP85_15150) - 2945366..2945992 (+) 627 WP_119543435.1 cupin domain-containing protein -
  LZP85_RS15155 (LZP85_15155) comGG 2946043..2946462 (-) 420 WP_119543434.1 competence type IV pilus minor pilin ComGG -
  LZP85_RS15160 (LZP85_15160) comGF 2946425..2946853 (-) 429 WP_119543481.1 competence type IV pilus minor pilin ComGF -
  LZP85_RS15165 (LZP85_15165) - 2946850..2947185 (-) 336 WP_025911553.1 type II secretion system protein -
  LZP85_RS15170 (LZP85_15170) comGD 2947169..2947603 (-) 435 WP_076512137.1 competence type IV pilus minor pilin ComGD -
  LZP85_RS15175 (LZP85_15175) comGC 2947605..2947916 (-) 312 WP_025911556.1 competence type IV pilus major pilin ComGC Machinery gene
  LZP85_RS15180 (LZP85_15180) comGB 2947930..2948988 (-) 1059 WP_025911558.1 competence type IV pilus assembly protein ComGB -
  LZP85_RS15185 (LZP85_15185) comGA 2948969..2950027 (-) 1059 WP_025911559.1 competence type IV pilus ATPase ComGA Machinery gene
  LZP85_RS15190 (LZP85_15190) - 2950244..2950627 (-) 384 WP_119543432.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  LZP85_RS15195 (LZP85_15195) - 2950907..2951146 (+) 240 WP_025911561.1 DUF2626 domain-containing protein -
  LZP85_RS15200 (LZP85_15200) - 2951190..2951822 (-) 633 WP_025911563.1 MBL fold metallo-hydrolase -
  LZP85_RS15205 (LZP85_15205) - 2952019..2952192 (+) 174 WP_025911564.1 DUF2759 domain-containing protein -
  LZP85_RS15210 (LZP85_15210) - 2952249..2953157 (-) 909 WP_226639226.1 M14 family metallocarboxypeptidase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39853.99 Da        Isoelectric Point: 8.3459

>NTDB_id=642375 LZP85_RS15185 WP_025911559.1 2948969..2950027(-) (comGA) [Priestia flexa strain DMP08]
MNEIEQLATRMIREACEMKSSDIHIIPRARDAIIQLRVDQDLVAHQTLPKEVSERLISHFKFLGSMDIGERRKPQNGALS
TTIDHIKVNLRLSTLPTLQDESLVIRVLPQTQTTSLKYLSLFQNHTKKLISLLKHSHGLIVFTGPTGSGKTTTLYTLLHE
VNHLLNRNVITLEDPIEQQSEKVLQVQVNERAGITYATGLKAILRHDPDIIMVGEIRDAETAQIAVRAALTGHLVLTTMH
TKDTKGSIYRLLEFGVSIQEIEQTLVAVAAQRLVEIKCNFCEGRCHPLCKKERLNRQASVYELLYGREVNEVINEVKGKE
FQYDYARLRDAIRKGIALGYLYSHALDGWGSY

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=642375 LZP85_RS15185 WP_025911559.1 2948969..2950027(-) (comGA) [Priestia flexa strain DMP08]
TTGAACGAAATTGAACAATTAGCCACACGCATGATTCGTGAAGCATGTGAGATGAAGAGCTCGGACATTCACATTATCCC
TCGAGCTAGAGATGCCATAATTCAGCTAAGAGTTGATCAAGATTTGGTTGCTCATCAAACGCTCCCAAAAGAGGTATCTG
AACGACTCATTTCCCACTTTAAATTTTTAGGGAGCATGGATATTGGTGAAAGACGAAAGCCTCAAAATGGTGCACTGTCT
ACAACAATCGATCATATTAAAGTTAATCTACGTTTATCCACTTTACCTACATTGCAGGATGAAAGTCTCGTTATTCGTGT
ATTACCCCAAACGCAAACAACTTCTCTTAAATATTTATCACTTTTTCAAAATCATACCAAAAAACTTATTTCACTGCTTA
AGCATTCACATGGATTAATTGTGTTTACTGGGCCAACAGGATCCGGTAAAACAACAACTTTGTATACGTTACTTCATGAG
GTCAACCATTTATTAAATCGAAATGTCATTACGCTTGAAGATCCAATTGAACAGCAGAGTGAAAAAGTACTGCAGGTACA
AGTGAATGAACGAGCTGGCATCACGTATGCAACAGGTTTAAAAGCAATTTTACGTCATGACCCTGATATTATTATGGTCG
GGGAAATCCGCGACGCTGAAACAGCTCAAATTGCGGTTCGCGCAGCTTTAACCGGTCATCTAGTACTGACAACTATGCAT
ACGAAAGATACAAAAGGCTCTATTTATCGATTGCTTGAGTTTGGTGTTAGTATTCAAGAAATTGAACAAACGTTGGTAGC
CGTAGCTGCACAGCGATTAGTCGAAATAAAATGTAATTTTTGTGAAGGAAGATGTCATCCGCTATGTAAGAAAGAGCGTT
TAAATAGACAGGCTAGCGTGTATGAGCTTCTATATGGAAGAGAAGTAAACGAAGTAATTAATGAAGTGAAAGGAAAGGAA
TTTCAATATGATTATGCACGACTAAGAGATGCAATTCGAAAAGGTATTGCGCTTGGGTATTTGTATTCACATGCGCTAGA
TGGGTGGGGGTCTTATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

60

99.432

0.597