Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LZP98_RS00285 Genome accession   NZ_CP090428
Coordinates   45146..45598 (-) Length   150 a.a.
NCBI ID   WP_014390703.1    Uniprot ID   -
Organism   Pasteurella multocida strain SD001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 40146..50598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZP98_RS00245 (LZP98_00245) - 40875..41261 (-) 387 WP_016533425.1 hypothetical protein -
  LZP98_RS00250 (LZP98_00250) - 41377..41832 (-) 456 WP_014390696.1 hypothetical protein -
  LZP98_RS00255 (LZP98_00255) - 41877..42230 (-) 354 WP_041423219.1 hypothetical protein -
  LZP98_RS00260 (LZP98_00260) - 42239..42736 (-) 498 WP_014391445.1 DUF551 domain-containing protein -
  LZP98_RS00265 (LZP98_00265) rdgC 42880..43782 (-) 903 WP_014667784.1 recombination-associated protein RdgC -
  LZP98_RS00270 (LZP98_00270) - 43785..44168 (-) 384 WP_014390700.1 hypothetical protein -
  LZP98_RS00275 (LZP98_00275) - 44247..44558 (-) 312 WP_014390701.1 DUF6378 domain-containing protein -
  LZP98_RS00280 (LZP98_00280) - 44558..45079 (-) 522 WP_014390702.1 MazG-like family protein -
  LZP98_RS00285 (LZP98_00285) ssb 45146..45598 (-) 453 WP_014390703.1 single-stranded DNA-binding protein Machinery gene
  LZP98_RS00290 (LZP98_00290) - 45609..46310 (-) 702 WP_014390704.1 ERF family protein -
  LZP98_RS00295 (LZP98_00295) - 46353..47003 (-) 651 WP_014390705.1 ribonuclease H-like domain-containing protein -
  LZP98_RS00300 (LZP98_00300) - 47176..47337 (-) 162 WP_014390707.1 hypothetical protein -
  LZP98_RS00305 (LZP98_00305) - 47351..47587 (-) 237 WP_014667786.1 hypothetical protein -
  LZP98_RS00310 (LZP98_00310) - 47559..47858 (-) 300 WP_014390709.1 hypothetical protein -
  LZP98_RS00315 (LZP98_00315) - 48006..48236 (+) 231 WP_223251317.1 hypothetical protein -
  LZP98_RS00320 (LZP98_00320) - 48298..48954 (-) 657 WP_014390711.1 Bro-N domain-containing protein -
  LZP98_RS00325 (LZP98_00325) - 49239..50075 (-) 837 WP_014390712.1 KilA-N domain-containing protein -
  LZP98_RS00330 (LZP98_00330) - 50186..50563 (-) 378 WP_014390713.1 hypothetical protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17063.94 Da        Isoelectric Point: 7.9707

>NTDB_id=642299 LZP98_RS00285 WP_014390703.1 45146..45598(-) (ssb) [Pasteurella multocida strain SD001]
MAGVNKVIIVGNLGNDPEIRTMPNGDPVAKISVATSESWIDKNTGERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQQQQAQAPQNNAYANAKAGKPVQQQAYNFEEDNIPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=642299 LZP98_RS00285 WP_014390703.1 45146..45598(-) (ssb) [Pasteurella multocida strain SD001]
ATGGCAGGTGTTAATAAAGTAATTATCGTGGGAAATTTGGGAAACGATCCTGAAATCCGCACAATGCCAAATGGCGACCC
TGTTGCAAAAATCAGCGTCGCAACCAGTGAAAGCTGGATCGACAAAAATACTGGCGAACGAAAAACACAAACTGAATGGC
ATTCTATCGTGTTCTATCGTCGCCAAGCAGAAATTTGCGGTCAGTATCTCAAAAAAGGATCGAAAGTGTATGTGGAAGGG
CGTTTAAGAACTCGTAAATGGCAAGACCAAAACGGGCAAGACCGCTACACCACAGAGATTCAAGGCGACGTATTACAAAT
GCTAGACAGTCGCCAAGATTCACAGCAACAGCAAGCACAGGCACCACAAAATAATGCTTATGCGAATGCGAAAGCTGGAA
AGCCTGTACAGCAACAAGCATATAACTTTGAAGAGGATAATATCCCATTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

62.222

100

0.747
  ssb Vibrio cholerae strain A1552

53.957

92.667

0.5
  ssb Neisseria gonorrhoeae MS11

46.715

91.333

0.427
  ssb Neisseria meningitidis MC58

46.715

91.333

0.427