Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   U722_RS11745 Genome accession   NC_023073
Coordinates   2508420..2508857 (-) Length   145 a.a.
NCBI ID   WP_024085600.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LFB112     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2503420..2513857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS11695 (U722_12480) sinI 2503804..2503977 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  U722_RS11700 (U722_12485) sinR 2504011..2504346 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  U722_RS11705 (U722_12490) tasA 2504394..2505179 (-) 786 WP_015388008.1 biofilm matrix protein TasA -
  U722_RS11710 (U722_12495) sipW 2505243..2505827 (-) 585 WP_003153100.1 signal peptidase I SipW -
  U722_RS11715 (U722_12500) tapA 2505799..2506470 (-) 672 WP_024085598.1 amyloid fiber anchoring/assembly protein TapA -
  U722_RS11720 (U722_12505) - 2506730..2507059 (+) 330 WP_024085599.1 DUF3889 domain-containing protein -
  U722_RS11725 (U722_12510) - 2507099..2507278 (-) 180 WP_003153093.1 YqzE family protein -
  U722_RS11730 (U722_12515) comGG 2507335..2507712 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  U722_RS11735 (U722_12520) comGF 2507713..2508108 (-) 396 WP_003153090.1 competence type IV pilus minor pilin ComGF -
  U722_RS11740 (U722_12525) comGE 2508122..2508436 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  U722_RS11745 (U722_12530) comGD 2508420..2508857 (-) 438 WP_024085600.1 competence type IV pilus minor pilin ComGD Machinery gene
  U722_RS11750 (U722_12535) comGC 2508847..2509113 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  U722_RS11755 (U722_12540) comGB 2509160..2510197 (-) 1038 WP_024085602.1 competence type IV pilus assembly protein ComGB Machinery gene
  U722_RS11760 (U722_12545) comGA 2510184..2511254 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  U722_RS11765 (U722_12550) - 2511446..2512396 (-) 951 WP_014305415.1 magnesium transporter CorA family protein -
  U722_RS11770 (U722_12555) - 2512542..2513843 (+) 1302 WP_014305416.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16302.80 Da        Isoelectric Point: 10.3354

>NTDB_id=64202 U722_RS11745 WP_024085600.1 2508420..2508857(-) (comGD) [Bacillus amyloliquefaciens LFB112]
MNNNRRTENGFTLLESLVVLSLASVLLTVLFTTVPPVCTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSFHITLVTLPESLEFNEKGHPNSGGKIRLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=64202 U722_RS11745 WP_024085600.1 2508420..2508857(-) (comGD) [Bacillus amyloliquefaciens LFB112]
TTGAACAATAACAGGCGGACAGAAAACGGGTTTACCCTTCTTGAAAGCCTGGTTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTTCAAAAAGATA
TTCAGCTTGCGCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGTAGGATTGTCGAGCGTTCTTTTGATTCATTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCGATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

55.479

100

0.559

Multiple sequence alignment