Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   U722_RS11700 Genome accession   NC_023073
Coordinates   2504011..2504346 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LFB112     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2499011..2509346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS11680 (U722_12465) gcvT 2499622..2500722 (-) 1101 WP_024085597.1 glycine cleavage system aminomethyltransferase GcvT -
  U722_RS11685 (U722_12470) - 2501145..2502815 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  U722_RS11690 (U722_12475) - 2502833..2503627 (+) 795 WP_003153106.1 YqhG family protein -
  U722_RS11695 (U722_12480) sinI 2503804..2503977 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  U722_RS11700 (U722_12485) sinR 2504011..2504346 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  U722_RS11705 (U722_12490) tasA 2504394..2505179 (-) 786 WP_015388008.1 biofilm matrix protein TasA -
  U722_RS11710 (U722_12495) sipW 2505243..2505827 (-) 585 WP_003153100.1 signal peptidase I SipW -
  U722_RS11715 (U722_12500) tapA 2505799..2506470 (-) 672 WP_024085598.1 amyloid fiber anchoring/assembly protein TapA -
  U722_RS11720 (U722_12505) - 2506730..2507059 (+) 330 WP_024085599.1 DUF3889 domain-containing protein -
  U722_RS11725 (U722_12510) - 2507099..2507278 (-) 180 WP_003153093.1 YqzE family protein -
  U722_RS11730 (U722_12515) comGG 2507335..2507712 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  U722_RS11735 (U722_12520) comGF 2507713..2508108 (-) 396 WP_003153090.1 competence type IV pilus minor pilin ComGF -
  U722_RS11740 (U722_12525) comGE 2508122..2508436 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  U722_RS11745 (U722_12530) comGD 2508420..2508857 (-) 438 WP_024085600.1 competence type IV pilus minor pilin ComGD Machinery gene
  U722_RS11750 (U722_12535) comGC 2508847..2509113 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=64199 U722_RS11700 WP_003153104.1 2504011..2504346(+) (sinR) [Bacillus amyloliquefaciens LFB112]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=64199 U722_RS11700 WP_003153104.1 2504011..2504346(+) (sinR) [Bacillus amyloliquefaciens LFB112]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment