Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   LY388_RS13560 Genome accession   NZ_CP090387
Coordinates   1833460..1834047 (-) Length   195 a.a.
NCBI ID   WP_001005366.1    Uniprot ID   A0A0K9UTP3
Organism   Vibrio cholerae strain GXFL1-4     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1828460..1839047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY388_RS13540 (LY388_13540) - 1828688..1829953 (-) 1266 WP_000835928.1 YdgA family protein -
  LY388_RS13545 (LY388_13545) - 1830176..1832131 (+) 1956 WP_234116019.1 ATP-binding protein -
  LY388_RS13550 (LY388_13550) - 1832128..1832625 (+) 498 WP_071187767.1 response regulator -
  LY388_RS13555 (LY388_13555) - 1832816..1833364 (+) 549 WP_001232641.1 hypothetical protein -
  LY388_RS13560 (LY388_13560) tfoX 1833460..1834047 (-) 588 WP_001005366.1 TfoX/Sxy family DNA transformation protein Regulator
  LY388_RS13565 (LY388_13565) - 1834425..1835345 (+) 921 WP_000019000.1 HDOD domain-containing protein -
  LY388_RS13570 (LY388_13570) - 1835366..1836271 (+) 906 WP_000948497.1 lysine exporter LysO family protein -
  LY388_RS13575 (LY388_13575) - 1836460..1836969 (+) 510 WP_000826867.1 hypothetical protein -
  LY388_RS13580 (LY388_13580) panP 1837079..1838725 (+) 1647 WP_148532349.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22816.03 Da        Isoelectric Point: 6.9718

>NTDB_id=641930 LY388_RS13560 WP_001005366.1 1833460..1834047(-) (tfoX) [Vibrio cholerae strain GXFL1-4]
MNEQQFFDYVTKFGAYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELLALGCEKYRHVKKQTTATVNYYDITE
LYEQHHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVRQAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=641930 LY388_RS13560 WP_001005366.1 1833460..1834047(-) (tfoX) [Vibrio cholerae strain GXFL1-4]
ATGAATGAGCAACAGTTTTTCGACTACGTAACTAAGTTTGGCGCCTACCAAAAACGCTCGATGTTTGGTGGTATTGGCTT
GTTTCAACACGACGCTATGTATGTGTTGGTCAGTGAAGACCGCATTTTTGTGCGTGGTGGAGAAGAGCTCGACCCTGAGC
TCTTGGCCTTAGGGTGCGAGAAATATCGCCATGTTAAAAAACAGACAACGGCAACCGTAAACTATTACGACATCACTGAA
CTGTATGAGCAACATCACCCTGAGCTAGACTCGATCATTGAACGCTCGATTCAGTTTTCTGTGAATCAGCGGGAATTTCA
ACGCTCAGCAGCCAGTCGTCGTCTACGGGATTTACCCAATATGCAACTGACTTTGGAGCGTATGGTAAAAAAAGCGGGCA
TTGACGATGTGGAAACTTTTATGAGTCTCGGTGCGCCAGAAGTGTTTAATAAGGTGCGTCAAGCTTATGGAAGTGATGTC
GATGTAAAACTACTGTGGAAGTTTGCGGGTGCGATTGAAGGCATTCACTGGAAACTGCTGCAAGAGCCGCGTAAGCGCCA
ACTGTTAGAAAGTTGTCAGCAGCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K9UTP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.