Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LY388_RS10230 Genome accession   NZ_CP090387
Coordinates   1014486..1014797 (+) Length   103 a.a.
NCBI ID   WP_172776695.1    Uniprot ID   -
Organism   Vibrio cholerae strain GXFL1-4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1009486..1019797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY388_RS10215 (LY388_10215) lon 1009523..1011883 (+) 2361 WP_001047611.1 endopeptidase La -
  LY388_RS10220 (LY388_10220) - 1012067..1012339 (+) 273 WP_001044516.1 HU family DNA-binding protein -
  LY388_RS10225 (LY388_10225) ppiD 1012492..1014351 (+) 1860 WP_172776696.1 peptidylprolyl isomerase -
  LY388_RS10230 (LY388_10230) comEA 1014486..1014797 (+) 312 WP_172776695.1 ComEA family DNA-binding protein Machinery gene
  LY388_RS10235 (LY388_10235) cmk 1014980..1015657 (+) 678 WP_000094751.1 (d)CMP kinase -
  LY388_RS10240 (LY388_10240) rpsA 1015766..1017436 (+) 1671 WP_000140318.1 30S ribosomal protein S1 -
  LY388_RS10245 (LY388_10245) ihfB 1017725..1018003 (+) 279 WP_000167341.1 integration host factor subunit beta -
  LY388_RS10250 (LY388_10250) - 1018142..1018423 (+) 282 WP_000691492.1 LapA family protein -
  LY388_RS10255 (LY388_10255) lapB 1018435..1019604 (+) 1170 WP_000889970.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10950.78 Da        Isoelectric Point: 5.0506

>NTDB_id=641924 LY388_RS10230 WP_172776695.1 1014486..1014797(+) (comEA) [Vibrio cholerae strain GXFL1-4]
MQIKTKIVTLFLALCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=641924 LY388_RS10230 WP_172776695.1 1014486..1014797(+) (comEA) [Vibrio cholerae strain GXFL1-4]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTGCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

99.029

100

0.99
  comEA Vibrio cholerae strain A1552

99.029

100

0.99
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544