Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LZG54_RS13440 Genome accession   NZ_CP090382
Coordinates   2788623..2789198 (-) Length   191 a.a.
NCBI ID   WP_096902231.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SCLZS30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2773591..2789198 2788623..2789198 within 0
IScluster/Tn 2784741..2788154 2788623..2789198 flank 469


Gene organization within MGE regions


Location: 2773591..2789198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG54_RS13345 (LZG54_13360) - 2774730..2775230 (-) 501 WP_019838469.1 YqhA family protein -
  LZG54_RS13350 (LZG54_13365) - 2775537..2775647 (-) 111 Protein_2579 IS3 family transposase -
  LZG54_RS13355 (LZG54_13370) - 2775677..2776381 (-) 705 WP_160255362.1 IS6-like element IS1006 family transposase -
  LZG54_RS13360 (LZG54_13375) - 2776609..2777583 (+) 975 WP_019838459.1 calcium/sodium antiporter -
  LZG54_RS13365 (LZG54_13380) - 2777661..2778365 (+) 705 WP_160255362.1 IS6-like element IS1006 family transposase -
  LZG54_RS13370 (LZG54_13385) - 2778514..2779080 (-) 567 WP_000678311.1 recombinase family protein -
  LZG54_RS13375 (LZG54_13390) - 2779586..2781040 (-) 1455 WP_234114193.1 SulP family inorganic anion transporter -
  LZG54_RS13380 (LZG54_13395) - 2781290..2781499 (-) 210 WP_004976362.1 hypothetical protein -
  LZG54_RS13385 (LZG54_13400) - 2781741..2781986 (+) 246 WP_000246756.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  LZG54_RS13390 (LZG54_13405) - 2781976..2782269 (+) 294 WP_234114194.1 type II toxin-antitoxin system RelE family toxin -
  LZG54_RS13395 (LZG54_13410) - 2782354..2782689 (+) 336 WP_035363642.1 hypothetical protein -
  LZG54_RS13400 (LZG54_13415) - 2782739..2782918 (+) 180 WP_016658770.1 hypothetical protein -
  LZG54_RS13405 (LZG54_13420) - 2782915..2783301 (+) 387 WP_004769969.1 type II toxin-antitoxin system death-on-curing family toxin -
  LZG54_RS13410 (LZG54_13425) - 2783303..2783854 (-) 552 WP_234114195.1 macro domain-containing protein -
  LZG54_RS13415 (LZG54_13430) - 2783860..2784543 (-) 684 WP_016658768.1 hypothetical protein -
  LZG54_RS13420 (LZG54_13435) - 2784753..2785541 (+) 789 Protein_2593 ISNCY family transposase -
  LZG54_RS13425 (LZG54_13440) - 2785613..2786688 (+) 1076 WP_234114182.1 IS3 family transposase -
  LZG54_RS13430 (LZG54_13445) - 2786894..2787340 (+) 447 WP_234114196.1 hypothetical protein -
  LZG54_RS13435 (LZG54_13450) - 2787340..2788154 (-) 815 Protein_2596 IS3 family transposase -
  LZG54_RS13440 (LZG54_13455) ssb 2788623..2789198 (-) 576 WP_096902231.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21036.83 Da        Isoelectric Point: 6.4800

>NTDB_id=641899 LZG54_RS13440 WP_096902231.1 2788623..2789198(-) (ssb) [Acinetobacter towneri strain SCLZS30]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDSANRGQSDQQDGGFAQPRFNNNQGGYGNQNQAPATGYANQNQGGFNQNQGG
GYANNNPSGFAPKPQAAPATAPADLDDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=641899 LZG54_RS13440 WP_096902231.1 2788623..2789198(-) (ssb) [Acinetobacter towneri strain SCLZS30]
ATGCGTGGTGTAAATAAAGTCATTTTAGTGGGTACTTTAGGTCGTGATCCTGAAACAAAAACTTTCCCAAACGGGGGTTC
TCTCACTCAATTTTCTATCGCAACCAGTGATGTCTGGACAGACAAAAACACAGGTGAGCGTAAAGAGCAAACAGAGTGGC
ATCGCATTGTTTTACATAACCGTTTAGGCGAGATTGCACAGCAATATTTACGCAAAGGTTCTAAAGTATATATTGAAGGT
TCATTGCGTACGCGTCAGTGGACAGACCAAAATGGTCAAGAGCGTTACACCACTGAAATTCGTGGCGATCAAATGCAAAT
GCTCGACTCTGCTAACCGTGGACAATCTGACCAGCAAGATGGTGGCTTTGCTCAACCACGTTTTAACAATAACCAAGGCG
GTTATGGCAATCAGAACCAAGCTCCAGCCACAGGTTATGCGAATCAAAATCAAGGCGGTTTTAACCAAAATCAGGGTGGT
GGCTATGCCAACAATAACCCAAGTGGTTTTGCACCGAAGCCACAAGCTGCGCCTGCAACCGCACCTGCAGATTTAGATGA
TGATCTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.769

100

0.56
  ssb Vibrio cholerae strain A1552

46.429

100

0.476
  ssb Neisseria gonorrhoeae MS11

40.314

100

0.403
  ssb Neisseria meningitidis MC58

38.542

100

0.387