Detailed information NTG0641809

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: OGM38_RS05285
• Genome accession: NZ_CP107164
• Coordinates: 1006610..1007620 (-)
• Length: 336 a.a.
• NCBI ID: WP_000568520.1
• Uniprot ID: -
• Organism: Escherichia coli strain R9
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1001610..1012620

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM38_RS05265 (OGM38_05255)	znuA	1002410..1003342 (-)	933	WP_001347089.1	zinc ABC transporter substrate-binding protein ZnuA	-
OGM38_RS05270 (OGM38_05260)	znuC	1003421..1004176 (+)	756	WP_000202996.1	zinc ABC transporter ATP-binding protein ZnuC	-
OGM38_RS05275 (OGM38_05265)	znuB	1004173..1004958 (+)	786	WP_000571478.1	zinc ABC transporter permease subunit ZnuB	-
OGM38_RS05285 (OGM38_05275)	ruvB	1006610..1007620 (-)	1011	WP_000568520.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
OGM38_RS05290 (OGM38_05280)	ruvA	1007629..1008240 (-)	612	WP_000580323.1	Holliday junction branch migration protein RuvA	-
OGM38_RS05295 (OGM38_05285)	yobI	1008379..1008444 (-)	66	WP_072093883.1	stress response small protein YobI	-
OGM38_RS05300 (OGM38_05290)	yebB	1008515..1009117 (+)	603	WP_001024911.1	YebB family permuted papain-like enzyme	-
OGM38_RS05305 (OGM38_05295)	ruvC	1009119..1009640 (-)	522	WP_001295503.1	crossover junction endodeoxyribonuclease RuvC	-
OGM38_RS05310 (OGM38_05300)	yebC	1009675..1010415 (-)	741	WP_000907234.1	YebC/PmpR family DNA-binding transcriptional regulator	-
OGM38_RS05315 (OGM38_05305)	nudB	1010444..1010896 (-)	453	WP_077249130.1	dihydroneopterin triphosphate diphosphatase	-

Sequence

Protein

• Length: 336 a.a.
• Molecular weight: 37163.73 Da
• Isoelectric Point: 4.7818

>NTDB_id=641809 OGM38_RS05285 WP_000568520.1 1006610..1007620(-) (ruvB) [Escherichia coli strain R9]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMS

Nucleotide

• Length: 1011 bp

>NTDB_id=641809 OGM38_RS05285 WP_000568520.1 1006610..1007620(-) (ruvB) [Escherichia coli strain R9]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCGCAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTATTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAATATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCAATGCTCACTAACCTTGAACCACA
CGATGTACTGTTTATTGATGAGATCCACCGTCTTTCACCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGATTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGTGCGCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGCGGGCCGGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGTCGTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.486	97.917	0.592
ruvB	Streptococcus pneumoniae TIGR4	58.934	94.94	0.56
ruvB	Streptococcus pneumoniae R6	58.934	94.94	0.56
ruvB	Streptococcus pneumoniae D39	58.934	94.94	0.56
ruvB	Synechocystis sp. PCC 6803	53.251	96.131	0.512
ruvB	Helicobacter pylori 26695	52.038	94.94	0.494