Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OGM39_RS01015 Genome accession   NZ_CP107162
Coordinates   221653..222189 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain R10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 216653..227189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGM39_RS00995 (OGM39_00995) aphA 216941..217654 (+) 714 WP_001226933.1 acid phosphatase AphA -
  OGM39_RS01000 (OGM39_01000) yjbQ 217765..218181 (+) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OGM39_RS01005 (OGM39_01005) yjbR 218185..218541 (+) 357 WP_000153726.1 MmcQ/YjbR family DNA-binding protein -
  OGM39_RS01010 (OGM39_01010) uvrA 218576..221398 (-) 2823 WP_000357755.1 excinuclease ABC subunit UvrA Machinery gene
  OGM39_RS01015 (OGM39_01015) ssb 221653..222189 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  OGM39_RS01020 (OGM39_01020) yjcB 222288..222569 (-) 282 WP_001296643.1 YjcB family protein -
  OGM39_RS01025 (OGM39_01025) pdeC 222998..224584 (+) 1587 WP_001296644.1 c-di-GMP phosphodiesterase PdeC -
  OGM39_RS01030 (OGM39_01030) soxS 224587..224910 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  OGM39_RS01035 (OGM39_01035) soxR 224996..225460 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=641725 OGM39_RS01015 WP_000168305.1 221653..222189(+) (ssb) [Escherichia coli strain R10]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=641725 OGM39_RS01015 WP_000168305.1 221653..222189(+) (ssb) [Escherichia coli strain R10]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489