Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LN341_RS01600 Genome accession   NZ_CP090364
Coordinates   325853..326392 (+) Length   179 a.a.
NCBI ID   WP_120513473.1    Uniprot ID   -
Organism   Photobacterium sp. TLY01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 320853..331392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN341_RS01590 (LN341_01590) - 320891..322678 (-) 1788 WP_234203902.1 PglL family O-oligosaccharyltransferase -
  LN341_RS01595 (LN341_01595) uvrA 322751..325600 (-) 2850 WP_234203903.1 excinuclease ABC subunit UvrA -
  LN341_RS01600 (LN341_01600) ssb 325853..326392 (+) 540 WP_120513473.1 single-stranded DNA-binding protein Machinery gene
  LN341_RS01605 (LN341_01605) - 326474..327388 (-) 915 WP_234203904.1 LysR family transcriptional regulator -
  LN341_RS01610 (LN341_01610) csrD 327586..329529 (+) 1944 WP_120513470.1 RNase E specificity factor CsrD -
  LN341_RS01615 (LN341_01615) - 329695..331149 (+) 1455 WP_234203905.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19767.84 Da        Isoelectric Point: 5.2358

>NTDB_id=641686 LN341_RS01600 WP_120513473.1 325853..326392(+) (ssb) [Photobacterium sp. TLY01]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSETWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAGGQGQGAPMGGQQQQGGWGQPQQPAQQSQQQNYAPQQQSAPK
QAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=641686 LN341_RS01600 WP_120513473.1 325853..326392(+) (ssb) [Photobacterium sp. TLY01]
ATGGCCAGTCGTGGCGTGAATAAAGTTATCCTGGTAGGTAACTTAGGCAATGATCCTGAAATCCGTTATATGCCAAACGG
CGGTGCAGTAGCGAATATTACTATCGCTACCTCTGAAACATGGCGTGACAAAGCGACCGGCGAGCAGCGAGAAAAAACGG
AATGGCACCGTGTTGTTCTGTTTGGCAAGCTGGCAGAAGTGGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGTCAGCTGCAAACTCGTAAGTGGCAGGACCAGAGTGGCCAGGATCGTTACAGCACTGAAGTGGTTGTTCAGGGTTA
TAACGGCATCATGCAAATGCTGGGTGGCCGTGCCGGTGGCCAGGGCCAGGGTGCGCCGATGGGGGGCCAGCAGCAGCAGG
GCGGTTGGGGACAACCTCAGCAACCGGCTCAGCAGTCACAACAGCAAAACTATGCGCCTCAGCAGCAGTCTGCGCCGAAG
CAAGCCCAGCCGCAGTACAATGAGCCGCCAATGGATTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

82.967

100

0.844
  ssb Glaesserella parasuis strain SC1401

55.556

100

0.587
  ssb Neisseria gonorrhoeae MS11

48.108

100

0.497
  ssb Neisseria meningitidis MC58

47.541

100

0.486