Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LVR30_RS07185 Genome accession   NZ_CP090356
Coordinates   1534392..1534937 (+) Length   181 a.a.
NCBI ID   WP_013024173.1    Uniprot ID   A0A8A4K787
Organism   Pantoea ananatis strain JBR-LB3-16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1529392..1539937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVR30_RS07175 (LVR30_07180) - 1530798..1531118 (+) 321 WP_071887034.1 TIGR04076 family protein -
  LVR30_RS07180 (LVR30_07185) uvrA 1531341..1534169 (-) 2829 WP_014595066.1 excinuclease ABC subunit UvrA -
  LVR30_RS07185 (LVR30_07190) ssb 1534392..1534937 (+) 546 WP_013024173.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LVR30_RS07190 (LVR30_07195) - 1535032..1535604 (-) 573 WP_232285089.1 DUF1349 domain-containing protein -
  LVR30_RS07195 (LVR30_07200) - 1535701..1536219 (-) 519 WP_014606935.1 isochorismatase family protein -
  LVR30_RS07200 (LVR30_07205) - 1536334..1537176 (+) 843 WP_105082564.1 AraC family transcriptional regulator -
  LVR30_RS07205 (LVR30_07210) - 1538525..1538920 (-) 396 WP_014606933.1 transposase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19611.52 Da        Isoelectric Point: 5.2456

>NTDB_id=641673 LVR30_RS07185 WP_013024173.1 1534392..1534937(+) (ssb) [Pantoea ananatis strain JBR-LB3-16]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAPAAGGGQGNNNGWGQPQQPQQANNNQFSGGAQSRPQQQ
PSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=641673 LVR30_RS07185 WP_013024173.1 1534392..1534937(+) (ssb) [Pantoea ananatis strain JBR-LB3-16]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTACATGCCAAATGG
TGGCGCTGTCGCCAACATTACGCTGGCTACCTCGGAAAGCTGGCGCGATAAGCAGACCGGTGAAAACAAAGAAATCACCG
AATGGCACCGTGTTGTGCTGTTTGGCAAGCTGGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTATATT
GAAGGCCAGCTGCGTACCCGTAAATGGCAGGATCAGGGCGGCCAGGAACGTTACACCACCGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAAATGCTGGGTGGACGTCAGCAGGGCGGTAACGCGCCAGCAGCAGGCGGCGGCCAGGGCAACAACAACG
GTTGGGGCCAGCCTCAGCAACCGCAGCAGGCGAACAACAACCAGTTTAGCGGTGGCGCGCAGTCTCGCCCGCAGCAGCAG
CCAAGCGCACCTGCCAGCAACAACAATGAACCACCGATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.283

100

0.735
  ssb Glaesserella parasuis strain SC1401

57.812

100

0.613
  ssb Neisseria meningitidis MC58

46.154

100

0.464
  ssb Neisseria gonorrhoeae MS11

46.154

100

0.464