Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LXN49_RS16350 Genome accession   NZ_CP090354
Coordinates   3214772..3215461 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain H31R-08     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3209772..3220461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN49_RS16315 (LXN49_16315) - 3209851..3210333 (-) 483 WP_034623751.1 flagellar protein FlgN -
  LXN49_RS16320 (LXN49_16320) flgM 3210352..3210615 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  LXN49_RS16325 (LXN49_16325) - 3210695..3211114 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  LXN49_RS16330 (LXN49_16330) comFC 3211171..3211827 (-) 657 WP_231506847.1 ComF family protein Machinery gene
  LXN49_RS16335 (LXN49_16335) - 3211854..3212147 (-) 294 WP_024426256.1 late competence development ComFB family protein -
  LXN49_RS16340 (LXN49_16340) comFA 3212196..3213593 (-) 1398 WP_311165396.1 DEAD/DEAH box helicase Machinery gene
  LXN49_RS16345 (LXN49_16345) - 3213714..3214556 (-) 843 WP_024423625.1 DegV family protein -
  LXN49_RS16350 (LXN49_16350) degU 3214772..3215461 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  LXN49_RS16355 (LXN49_16355) degS 3215526..3216701 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  LXN49_RS16360 (LXN49_16360) - 3216922..3217590 (+) 669 WP_012011434.1 YigZ family protein -
  LXN49_RS16365 (LXN49_16365) - 3217575..3218666 (+) 1092 WP_024423626.1 LCP family protein -
  LXN49_RS16370 (LXN49_16370) - 3218702..3219769 (-) 1068 WP_024423627.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=641622 LXN49_RS16350 WP_008348273.1 3214772..3215461(-) (degU) [Bacillus safensis strain H31R-08]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=641622 LXN49_RS16350 WP_008348273.1 3214772..3215461(-) (degU) [Bacillus safensis strain H31R-08]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGCTAAAAGA
AATGGATGCAGACACACTTATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCTTGGCAACCAGCGGCGTTTCAGCACATCCACAGCATGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996