Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LXN49_RS16330 Genome accession   NZ_CP090354
Coordinates   3211171..3211827 (-) Length   218 a.a.
NCBI ID   WP_231506847.1    Uniprot ID   -
Organism   Bacillus safensis strain H31R-08     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3206171..3216827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN49_RS16295 (LXN49_16295) fliW 3206309..3206743 (-) 435 WP_024423615.1 flagellar assembly protein FliW -
  LXN49_RS16300 (LXN49_16300) - 3206772..3207350 (-) 579 WP_024426253.1 DUF6470 family protein -
  LXN49_RS16305 (LXN49_16305) flgL 3207397..3208305 (-) 909 WP_024423617.1 flagellar hook-associated protein FlgL -
  LXN49_RS16310 (LXN49_16310) flgK 3208315..3209835 (-) 1521 WP_024423618.1 flagellar hook-associated protein FlgK -
  LXN49_RS16315 (LXN49_16315) - 3209851..3210333 (-) 483 WP_034623751.1 flagellar protein FlgN -
  LXN49_RS16320 (LXN49_16320) flgM 3210352..3210615 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  LXN49_RS16325 (LXN49_16325) - 3210695..3211114 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  LXN49_RS16330 (LXN49_16330) comFC 3211171..3211827 (-) 657 WP_231506847.1 ComF family protein Machinery gene
  LXN49_RS16335 (LXN49_16335) - 3211854..3212147 (-) 294 WP_024426256.1 late competence development ComFB family protein -
  LXN49_RS16340 (LXN49_16340) comFA 3212196..3213593 (-) 1398 WP_311165396.1 DEAD/DEAH box helicase Machinery gene
  LXN49_RS16345 (LXN49_16345) - 3213714..3214556 (-) 843 WP_024423625.1 DegV family protein -
  LXN49_RS16350 (LXN49_16350) degU 3214772..3215461 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  LXN49_RS16355 (LXN49_16355) degS 3215526..3216701 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24993.15 Da        Isoelectric Point: 10.0431

>NTDB_id=641620 LXN49_RS16330 WP_231506847.1 3211171..3211827(-) (comFC) [Bacillus safensis strain H31R-08]
MPAFTWKSFLLLNDDRLCVACKNHLVKIERPICPTCGRAQSNDQLCRDCNRWNERSDSIKILVKNRSVYTYNELMKDVLA
RFKFRGDTALAELFQKDVQAAFKHSFCIKDPLLIPIPLSHERLKERGFNQSVIIASLLDKPILQPLVKIHQSKQSKKKKN
ERLDQKGLFQIKQTDAIVQRDIILVDDIYTTGATIYDAARILKDAGAKSVSSFTLIRS

Nucleotide


Download         Length: 657 bp        

>NTDB_id=641620 LXN49_RS16330 WP_231506847.1 3211171..3211827(-) (comFC) [Bacillus safensis strain H31R-08]
GTGCCTGCTTTTACATGGAAATCATTCCTACTATTAAATGATGATCGCCTTTGTGTAGCATGTAAGAATCACTTAGTAAA
GATTGAGCGTCCTATTTGTCCAACATGCGGAAGGGCGCAGTCAAATGACCAATTGTGCCGGGACTGTAACAGATGGAATG
AACGCTCTGATTCTATTAAAATCCTTGTAAAAAATAGGTCAGTTTATACTTACAACGAGTTGATGAAAGATGTCCTTGCC
CGCTTTAAATTTCGGGGTGATACGGCTTTAGCTGAGCTGTTTCAAAAAGATGTACAAGCAGCATTTAAACATTCCTTCTG
CATAAAAGACCCATTGCTGATACCGATTCCTTTAAGTCATGAAAGACTAAAAGAAAGAGGATTTAATCAGTCCGTGATAA
TCGCTTCTTTGCTAGATAAGCCAATATTGCAGCCACTCGTGAAAATACATCAAAGTAAGCAGTCTAAAAAAAAGAAAAAT
GAACGCCTAGATCAAAAAGGATTGTTTCAAATAAAGCAAACAGATGCGATTGTTCAAAGGGATATTATATTAGTTGATGA
TATCTATACAACGGGAGCAACCATCTATGATGCGGCAAGAATTTTGAAAGACGCAGGTGCTAAAAGTGTTTCTTCTTTTA
CGTTGATACGTAGTTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-49)

Phosphoribosyl transferase domain (Pribosyltran)

(127-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

50

99.083

0.495