Detailed information NTG0641621

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: LXN49_RS16340
• Genome accession: NZ_CP090354
• Coordinates: 3212196..3213593 (-)
• Length: 465 a.a.
• NCBI ID: WP_311165396.1
• Uniprot ID: -
• Organism: Bacillus safensis strain H31R-08
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3207196..3218593

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LXN49_RS16305 (LXN49_16305)	flgL	3207397..3208305 (-)	909	WP_024423617.1	flagellar hook-associated protein FlgL	-
LXN49_RS16310 (LXN49_16310)	flgK	3208315..3209835 (-)	1521	WP_024423618.1	flagellar hook-associated protein FlgK	-
LXN49_RS16315 (LXN49_16315)	-	3209851..3210333 (-)	483	WP_034623751.1	flagellar protein FlgN	-
LXN49_RS16320 (LXN49_16320)	flgM	3210352..3210615 (-)	264	WP_024423620.1	flagellar biosynthesis anti-sigma factor FlgM	-
LXN49_RS16325 (LXN49_16325)	-	3210695..3211114 (-)	420	WP_024423621.1	TIGR03826 family flagellar region protein	-
LXN49_RS16330 (LXN49_16330)	comFC	3211171..3211827 (-)	657	WP_231506847.1	ComF family protein	Machinery gene
LXN49_RS16335 (LXN49_16335)	-	3211854..3212147 (-)	294	WP_024426256.1	late competence development ComFB family protein	-
LXN49_RS16340 (LXN49_16340)	comFA	3212196..3213593 (-)	1398	WP_311165396.1	DEAD/DEAH box helicase	Machinery gene
LXN49_RS16345 (LXN49_16345)	-	3213714..3214556 (-)	843	WP_024423625.1	DegV family protein	-
LXN49_RS16350 (LXN49_16350)	degU	3214772..3215461 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
LXN49_RS16355 (LXN49_16355)	degS	3215526..3216701 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator
LXN49_RS16360 (LXN49_16360)	-	3216922..3217590 (+)	669	WP_012011434.1	YigZ family protein	-

Sequence

Protein

• Length: 465 a.a.
• Molecular weight: 53220.17 Da
• Isoelectric Point: 9.9672

>NTDB_id=641621 LXN49_RS16340 WP_311165396.1 3212196..3213593(-) (comFA) [Bacillus safensis strain H31R-08]
MNMDKAMELMRQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKAAECGFLYEWTGPQMVETCQAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGVTITVLYGGSPQRFQITPLVITTTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNRGVRIYLSATPSRKMTREVSRGKLEAIKIPLRFHEQPLPIPTFHWIGHWKKKLKKNQLPPKVMNWMQ
RHIANKRRILLFVPSIATMKKVTKILREQSLNVEGVSADDPNRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIAKMNDTAAKEFSEKRCGFN

Nucleotide

• Length: 1398 bp

>NTDB_id=641621 LXN49_RS16340 WP_311165396.1 3212196..3213593(-) (comFA) [Bacillus safensis strain H31R-08]
TTGAATATGGACAAAGCAATGGAACTAATGCGGCAGCTGCATTCACGCCATCTGCTCACTGTTGAAACAAAGTGTCCACA
GTCCAATTTAGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGGTCTCCAGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTATTTCGCTCATTCTCCATGTGAGGTGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAGCAGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACATG
CCAAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATTAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCACGGAATCGAATATGCGTTA
AATCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTAGTGCTTGAACTCGAACCACGGCTTAGAAAAGCATT
TCAAGGGGTGACAATTACCGTACTTTATGGAGGCAGTCCTCAAAGGTTTCAAATAACACCGCTTGTGATCACCACAACCC
ACCAGCTGATGAGATACAAGAATGCTTTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACAGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAGAAA
AATGACGAGAGAGGTTTCTCGTGGAAAACTGGAAGCGATAAAAATTCCTTTGCGTTTTCACGAGCAACCATTACCCATAC
CGACCTTTCATTGGATCGGTCATTGGAAAAAGAAATTAAAAAAGAACCAGCTGCCCCCTAAAGTGATGAATTGGATGCAG
AGACATATTGCAAATAAGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTACCATGAAGAAGGTAACGAAGATTCTTCG
AGAACAATCCTTGAACGTGGAGGGGGTATCTGCCGATGATCCGAATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACGATTCCAAATGTTCAAGTGGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTCCAGATATCTGGACGGGTAGGCAGACACCCGGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGCAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACGGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (324-420)

• Type III restriction enzyme, res subunit (ResIII) (116-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	51.974	98.065	0.51
comFA/cflA	Streptococcus pneumoniae Rx1	38.497	94.409	0.363
comFA/cflA	Streptococcus pneumoniae D39	38.497	94.409	0.363
comFA/cflA	Streptococcus pneumoniae R6	38.497	94.409	0.363
comFA/cflA	Streptococcus pneumoniae TIGR4	38.269	94.409	0.361