Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   LXN49_RS11420 Genome accession   NZ_CP090354
Coordinates   2276458..2276751 (-) Length   97 a.a.
NCBI ID   WP_024422977.1    Uniprot ID   A0A0M2EIN6
Organism   Bacillus safensis strain H31R-08     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2271458..2281751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN49_RS11375 (LXN49_11375) sinR 2271625..2271960 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  LXN49_RS11380 (LXN49_11380) tasA 2272028..2272828 (-) 801 WP_024422970.1 biofilm matrix protein TasA -
  LXN49_RS11385 (LXN49_11385) sipW 2272883..2273455 (-) 573 WP_024422971.1 signal peptidase I SipW -
  LXN49_RS11390 (LXN49_11390) tapA 2273508..2274035 (-) 528 WP_234107214.1 amyloid fiber anchoring/assembly protein TapA -
  LXN49_RS11395 (LXN49_11395) - 2274335..2274613 (+) 279 WP_171464609.1 DUF3889 domain-containing protein -
  LXN49_RS11400 (LXN49_11400) - 2274648..2274842 (-) 195 WP_024422974.1 YqzE family protein -
  LXN49_RS11405 (LXN49_11405) - 2274902..2275285 (-) 384 WP_234107215.1 competence type IV pilus minor pilin ComGG -
  LXN49_RS11410 (LXN49_11410) comGF 2275282..2275809 (-) 528 WP_267955778.1 competence type IV pilus minor pilin ComGF -
  LXN49_RS19015 comGE 2275721..2276035 (-) 315 WP_267955779.1 competence type IV pilus minor pilin ComGE -
  LXN49_RS11415 (LXN49_11415) comGD 2276019..2276465 (-) 447 WP_024422976.1 competence type IV pilus minor pilin ComGD -
  LXN49_RS11420 (LXN49_11420) comGC 2276458..2276751 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  LXN49_RS11425 (LXN49_11425) comGB 2276768..2277808 (-) 1041 WP_234107217.1 competence type IV pilus assembly protein ComGB -
  LXN49_RS11430 (LXN49_11430) comGA 2277789..2278859 (-) 1071 WP_025092972.1 competence type IV pilus ATPase ComGA Machinery gene
  LXN49_RS11435 (LXN49_11435) - 2279040..2279915 (-) 876 WP_024422979.1 STAS domain-containing protein -
  LXN49_RS11445 (LXN49_11445) - 2280139..2280519 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  LXN49_RS11450 (LXN49_11450) - 2280732..2280974 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  LXN49_RS11455 (LXN49_11455) - 2281022..2281660 (-) 639 WP_056767335.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10686.62 Da        Isoelectric Point: 7.3218

>NTDB_id=641603 LXN49_RS11420 WP_024422977.1 2276458..2276751(-) (comGC) [Bacillus safensis strain H31R-08]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQAIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGNVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=641603 LXN49_RS11420 WP_024422977.1 2276458..2276751(-) (comGC) [Bacillus safensis strain H31R-08]
ATGAATGATAAAGGATTTACCCTGTTAGAAATGTTAATAGTCATGCTCGTAATATCCATTCTTTTACTCATTACCATACC
GAATATCACACGTCATCACCAAGCGATTCAGGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTCAGCACACAAGTGATGG
CATATGAATTGGAGCATGATGGGAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGTTATGTCAAAAAGGGATTAACT
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCAACGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2EIN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

42.222

92.784

0.392
  comGC Staphylococcus aureus N315

42.222

92.784

0.392