Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LXN49_RS11375 Genome accession   NZ_CP090354
Coordinates   2271625..2271960 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain H31R-08     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2266625..2276960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN49_RS11355 (LXN49_11355) gcvT 2267113..2268210 (-) 1098 WP_197172671.1 glycine cleavage system aminomethyltransferase GcvT -
  LXN49_RS11360 (LXN49_11360) - 2268762..2270432 (+) 1671 WP_197172670.1 DEAD/DEAH box helicase -
  LXN49_RS11365 (LXN49_11365) - 2270447..2271244 (+) 798 WP_197172669.1 YqhG family protein -
  LXN49_RS11370 (LXN49_11370) - 2271427..2271591 (+) 165 WP_073206269.1 anti-repressor SinI family protein -
  LXN49_RS11375 (LXN49_11375) sinR 2271625..2271960 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  LXN49_RS11380 (LXN49_11380) tasA 2272028..2272828 (-) 801 WP_024422970.1 biofilm matrix protein TasA -
  LXN49_RS11385 (LXN49_11385) sipW 2272883..2273455 (-) 573 WP_024422971.1 signal peptidase I SipW -
  LXN49_RS11390 (LXN49_11390) tapA 2273508..2274035 (-) 528 WP_234107214.1 amyloid fiber anchoring/assembly protein TapA -
  LXN49_RS11395 (LXN49_11395) - 2274335..2274613 (+) 279 WP_171464609.1 DUF3889 domain-containing protein -
  LXN49_RS11400 (LXN49_11400) - 2274648..2274842 (-) 195 WP_024422974.1 YqzE family protein -
  LXN49_RS11405 (LXN49_11405) - 2274902..2275285 (-) 384 WP_234107215.1 competence type IV pilus minor pilin ComGG -
  LXN49_RS11410 (LXN49_11410) comGF 2275282..2275809 (-) 528 WP_267955778.1 competence type IV pilus minor pilin ComGF -
  LXN49_RS19015 comGE 2275721..2276035 (-) 315 WP_267955779.1 competence type IV pilus minor pilin ComGE -
  LXN49_RS11415 (LXN49_11415) comGD 2276019..2276465 (-) 447 WP_024422976.1 competence type IV pilus minor pilin ComGD -
  LXN49_RS11420 (LXN49_11420) comGC 2276458..2276751 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=641602 LXN49_RS11375 WP_024422969.1 2271625..2271960(+) (sinR) [Bacillus safensis strain H31R-08]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=641602 LXN49_RS11375 WP_024422969.1 2271625..2271960(+) (sinR) [Bacillus safensis strain H31R-08]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946