Detailed information NTG0641604

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: OGM41_RS15005
• Genome accession: NZ_CP107153
• Coordinates: 3042384..3043409 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain R12
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3037384..3048409

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM41_RS14975 (OGM41_14950)	zapB	3037468..3037713 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
OGM41_RS14980 (OGM41_14955)	rraA	3037798..3038283 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
OGM41_RS14985 (OGM41_14960)	menA	3038376..3039302 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
OGM41_RS14990 (OGM41_14965)	hslU	3039369..3040700 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
OGM41_RS14995 (OGM41_14970)	hslV	3040710..3041240 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
OGM41_RS15000 (OGM41_14975)	ftsN	3041333..3042292 (-)	960	WP_000068834.1	cell division protein FtsN	-
OGM41_RS15005 (OGM41_14980)	cytR	3042384..3043409 (-)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
OGM41_RS15010 (OGM41_14985)	priA	3043565..3045763 (-)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
OGM41_RS15015 (OGM41_14990)	rpmE	3045966..3046178 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
OGM41_RS15020 (OGM41_14995)	yiiX	3046239..3046847 (-)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
OGM41_RS15025 (OGM41_15000)	metJ	3046907..3047224 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=641604 OGM41_RS15005 WP_000644908.1 3042384..3043409(-) (cytR) [Escherichia coli strain R12]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=641604 OGM41_RS15005 WP_000644908.1 3042384..3043409(-) (cytR) [Escherichia coli strain R12]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625