Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | IUD23_RS08865 | Genome accession | NZ_CP090316 |
| Coordinates | 1967546..1968040 (+) | Length | 164 a.a. |
| NCBI ID | WP_004089231.1 | Uniprot ID | Q87DQ5 |
| Organism | Xylella fastidiosa subsp. morus strain Riv16 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1921681..1968040 | 1967546..1968040 | within | 0 |
Gene organization within MGE regions
Location: 1921681..1968040
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUD23_RS08575 (IUD23_08575) | - | 1921681..1922742 (-) | 1062 | WP_004090681.1 | tyrosine-type recombinase/integrase | - |
| IUD23_RS08580 (IUD23_08580) | - | 1922754..1922990 (-) | 237 | WP_004090683.1 | DUF4224 domain-containing protein | - |
| IUD23_RS08585 (IUD23_08585) | - | 1922987..1924381 (-) | 1395 | WP_234056284.1 | DEAD/DEAH box helicase | - |
| IUD23_RS08590 (IUD23_08590) | - | 1924466..1924828 (+) | 363 | WP_234056272.1 | DUF1640 domain-containing protein | - |
| IUD23_RS08595 (IUD23_08595) | - | 1924830..1925108 (-) | 279 | WP_234056263.1 | VRR-NUC domain-containing protein | - |
| IUD23_RS08600 (IUD23_08600) | - | 1925105..1927252 (-) | 2148 | WP_234056285.1 | DNA polymerase | - |
| IUD23_RS08605 (IUD23_08605) | - | 1927286..1928443 (-) | 1158 | WP_234056261.1 | BRO family protein | - |
| IUD23_RS08610 (IUD23_08610) | - | 1928568..1929134 (-) | 567 | WP_234056260.1 | DUF2815 family protein | - |
| IUD23_RS08615 (IUD23_08615) | - | 1929131..1930411 (-) | 1281 | WP_234056286.1 | DUF2800 domain-containing protein | - |
| IUD23_RS08620 (IUD23_08620) | - | 1930408..1930896 (-) | 489 | WP_338126343.1 | hypothetical protein | - |
| IUD23_RS08625 (IUD23_08625) | - | 1930896..1931090 (-) | 195 | WP_016024078.1 | hypothetical protein | - |
| IUD23_RS08630 (IUD23_08630) | - | 1931122..1931316 (-) | 195 | WP_020852641.1 | hypothetical protein | - |
| IUD23_RS08635 (IUD23_08635) | - | 1931313..1931714 (-) | 402 | WP_004088547.1 | hypothetical protein | - |
| IUD23_RS08640 (IUD23_08640) | - | 1931714..1932175 (-) | 462 | WP_004088545.1 | DUF1566 domain-containing protein | - |
| IUD23_RS12295 | - | 1932172..1932519 (-) | 348 | WP_050812593.1 | hypothetical protein | - |
| IUD23_RS08650 (IUD23_08650) | - | 1933194..1933952 (-) | 759 | WP_038230430.1 | helix-turn-helix transcriptional regulator | - |
| IUD23_RS08655 (IUD23_08655) | - | 1934038..1934298 (+) | 261 | WP_012382631.1 | YdaS family helix-turn-helix protein | - |
| IUD23_RS08660 (IUD23_08660) | - | 1934295..1934600 (-) | 306 | WP_038230427.1 | hypothetical protein | - |
| IUD23_RS08665 (IUD23_08665) | - | 1934728..1934916 (+) | 189 | WP_004085135.1 | hypothetical protein | - |
| IUD23_RS08670 (IUD23_08670) | - | 1934913..1935161 (+) | 249 | WP_004085338.1 | hypothetical protein | - |
| IUD23_RS08675 (IUD23_08675) | - | 1935179..1935412 (+) | 234 | WP_234056289.1 | hypothetical protein | - |
| IUD23_RS08680 (IUD23_08680) | - | 1935440..1936006 (+) | 567 | WP_234056290.1 | Bro-N domain-containing protein | - |
| IUD23_RS08685 (IUD23_08685) | - | 1936142..1938688 (+) | 2547 | WP_234056291.1 | phage/plasmid primase, P4 family | - |
| IUD23_RS08690 (IUD23_08690) | - | 1939496..1940113 (+) | 618 | WP_038230188.1 | hypothetical protein | - |
| IUD23_RS08695 (IUD23_08695) | - | 1940080..1940580 (+) | 501 | WP_234056292.1 | lysozyme | - |
| IUD23_RS08700 (IUD23_08700) | - | 1940573..1940903 (+) | 331 | Protein_1699 | phage holin family protein | - |
| IUD23_RS08705 (IUD23_08705) | - | 1940893..1941354 (+) | 462 | WP_020852852.1 | hypothetical protein | - |
| IUD23_RS08710 (IUD23_08710) | - | 1941356..1941580 (+) | 225 | WP_234056294.1 | hypothetical protein | - |
| IUD23_RS08715 (IUD23_08715) | - | 1941711..1942286 (+) | 576 | WP_004086888.1 | terminase small subunit | - |
| IUD23_RS08720 (IUD23_08720) | - | 1942279..1944231 (+) | 1953 | WP_038230181.1 | phage terminase large subunit family protein | - |
| IUD23_RS08725 (IUD23_08725) | - | 1944235..1944786 (+) | 552 | WP_038230179.1 | hypothetical protein | - |
| IUD23_RS08730 (IUD23_08730) | - | 1944783..1946369 (+) | 1587 | WP_040123115.1 | phage portal protein | - |
| IUD23_RS08735 (IUD23_08735) | - | 1946366..1948240 (+) | 1875 | WP_038230171.1 | phage major capsid protein | - |
| IUD23_RS08740 (IUD23_08740) | - | 1948258..1948566 (+) | 309 | WP_234056295.1 | hypothetical protein | - |
| IUD23_RS08745 (IUD23_08745) | - | 1948517..1948840 (+) | 324 | WP_027700441.1 | hypothetical protein | - |
| IUD23_RS08750 (IUD23_08750) | - | 1948837..1949358 (+) | 522 | WP_038230165.1 | hypothetical protein | - |
| IUD23_RS08755 (IUD23_08755) | - | 1949334..1949876 (+) | 543 | WP_038230164.1 | hypothetical protein | - |
| IUD23_RS08760 (IUD23_08760) | - | 1949873..1950460 (+) | 588 | WP_040123117.1 | phage baseplate assembly protein V | - |
| IUD23_RS08765 (IUD23_08765) | - | 1950529..1950930 (-) | 402 | WP_004090697.1 | type II toxin-antitoxin system MqsA family antitoxin | - |
| IUD23_RS08770 (IUD23_08770) | - | 1950933..1951235 (-) | 303 | WP_038230541.1 | type II toxin-antitoxin system MqsR family toxin | - |
| IUD23_RS08775 (IUD23_08775) | - | 1951323..1951598 (-) | 276 | WP_004085172.1 | HigA family addiction module antitoxin | - |
| IUD23_RS08780 (IUD23_08780) | - | 1951609..1951890 (-) | 282 | WP_004085174.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| IUD23_RS08785 (IUD23_08785) | - | 1952088..1952426 (+) | 339 | WP_004088650.1 | GPW/gp25 family protein | - |
| IUD23_RS08790 (IUD23_08790) | - | 1952426..1953319 (+) | 894 | WP_234056296.1 | baseplate J/gp47 family protein | - |
| IUD23_RS08795 (IUD23_08795) | - | 1953312..1953869 (+) | 558 | WP_027700436.1 | phage tail protein I | - |
| IUD23_RS08800 (IUD23_08800) | - | 1953877..1955469 (+) | 1593 | WP_040123119.1 | tail fiber domain-containing protein | - |
| IUD23_RS08805 (IUD23_08805) | - | 1955534..1956712 (+) | 1179 | WP_027700434.1 | phage tail sheath family protein | - |
| IUD23_RS08810 (IUD23_08810) | - | 1956712..1957221 (+) | 510 | WP_012337639.1 | phage major tail tube protein | - |
| IUD23_RS08815 (IUD23_08815) | - | 1957224..1957511 (+) | 288 | WP_012337638.1 | phage tail assembly protein | - |
| IUD23_RS08820 (IUD23_08820) | - | 1957638..1959857 (+) | 2220 | WP_338126341.1 | phage tail tape measure protein | - |
| IUD23_RS08825 (IUD23_08825) | - | 1959854..1960336 (+) | 483 | WP_071869466.1 | phage tail protein | - |
| IUD23_RS08830 (IUD23_08830) | - | 1960333..1960551 (+) | 219 | WP_038230466.1 | tail protein X | - |
| IUD23_RS08835 (IUD23_08835) | - | 1960542..1961624 (+) | 1083 | WP_234056298.1 | phage late control D family protein | - |
| IUD23_RS08840 (IUD23_08840) | cyoD | 1961920..1962261 (-) | 342 | WP_004089237.1 | cytochrome o ubiquinol oxidase subunit IV | - |
| IUD23_RS08845 (IUD23_08845) | cyoC | 1962261..1962869 (-) | 609 | WP_004089235.1 | cytochrome o ubiquinol oxidase subunit III | - |
| IUD23_RS08850 (IUD23_08850) | cyoB | 1962875..1964872 (-) | 1998 | WP_027700013.1 | cytochrome o ubiquinol oxidase subunit I | - |
| IUD23_RS08855 (IUD23_08855) | cyoA | 1964866..1965825 (-) | 960 | WP_027700012.1 | ubiquinol oxidase subunit II | - |
| IUD23_RS08860 (IUD23_08860) | - | 1966294..1967295 (-) | 1002 | WP_038229804.1 | polyprenyl synthetase family protein | - |
| IUD23_RS08865 (IUD23_08865) | ssb | 1967546..1968040 (+) | 495 | WP_004089231.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 164 a.a. Molecular weight: 18227.20 Da Isoelectric Point: 5.9527
>NTDB_id=641491 IUD23_RS08865 WP_004089231.1 1967546..1968040(+) (ssb) [Xylella fastidiosa subsp. morus strain Riv16]
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKDGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQTRQPSQSPQSSPPPMDDFADD
DIPF
MARGINKVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKDGNTQERTEWHRVKFFGKLGEIAGEYLRKGSQCYIEG
SIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQRQTSQRQDYAPRRQTRQPSQSPQSSPPPMDDFADD
DIPF
Nucleotide
Download Length: 495 bp
>NTDB_id=641491 IUD23_RS08865 WP_004089231.1 1967546..1968040(+) (ssb) [Xylella fastidiosa subsp. morus strain Riv16]
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAATCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTTCGTAAGGACAAGGATGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATTCGCTATGACAAGTTCACTGGCCAGGATGGCCAAGAGCGCTATGTTACAGAGATTGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGTGATGGTGGCGGTATGGGCGGGGGTGGTGAGCGCCCACAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGACCCGTCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA
ATGGCCCGTGGTATCAATAAAGTCATCCTCGTCGGTAATCTCGGTAACGATCCGGATATCAAATACACCCAAGGTGGTAT
GACGATCACTACCATCAGCTTGGCGACAACCAGTGTTCGTAAGGACAAGGATGGCAATACCCAGGAGCGGACCGAATGGC
ACAGGGTCAAGTTTTTCGGAAAACTCGGTGAGATTGCCGGGGAATATCTACGTAAGGGATCACAGTGCTATATCGAAGGG
AGCATTCGCTATGACAAGTTCACTGGCCAGGATGGCCAAGAGCGCTATGTTACAGAGATTGTTGCTGATGAGATGCAAAT
GTTGGGTGGCCGTAGTGATGGTGGCGGTATGGGCGGGGGTGGTGAGCGCCCACAGCGTCAAACATCGCAGCGTCAGGATT
ACGCCCCACGTCGCCAGACCCGTCAGCCGTCACAGTCGCCGCAATCTTCACCGCCGCCGATGGACGATTTCGCTGATGAC
GATATTCCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
49.153 |
100 |
0.53 |
| ssb | Glaesserella parasuis strain SC1401 |
46.927 |
100 |
0.512 |
| ssb | Neisseria meningitidis MC58 |
41.618 |
100 |
0.439 |
| ssb | Neisseria gonorrhoeae MS11 |
41.04 |
100 |
0.433 |