Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   LVJ10_RS03695 Genome accession   NZ_CP090217
Coordinates   838947..839621 (-) Length   224 a.a.
NCBI ID   WP_048608563.1    Uniprot ID   A0A0M0HVE7
Organism   Providencia rettgeri strain YK205     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 833947..844621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ10_RS21300 (LVJ10_03675) - 835084..836502 (+) 1419 WP_004249371.1 SIR2 family protein -
  LVJ10_RS03690 (LVJ10_03680) - 836499..838538 (+) 2040 WP_004249372.1 DUF87 domain-containing protein -
  LVJ10_RS03695 (LVJ10_03685) ideA 838947..839621 (-) 675 WP_048608563.1 endonuclease Regulator
  LVJ10_RS03700 (LVJ10_03690) - 839663..840952 (-) 1290 WP_048608532.1 ISL3 family transposase -
  LVJ10_RS03705 (LVJ10_03695) lspA 840974..841480 (-) 507 WP_007146113.1 signal peptidase II -
  LVJ10_RS03710 (LVJ10_03700) - 841490..842386 (-) 897 WP_048608527.1 cation transporter -
  LVJ10_RS03715 (LVJ10_03705) cadR 842482..842889 (+) 408 WP_048608525.1 Cd(II)/Pb(II)-responsive transcriptional regulator -
  LVJ10_RS03720 (LVJ10_03710) - 843119..843721 (-) 603 WP_048608523.1 hypothetical protein -
  LVJ10_RS03725 (LVJ10_03715) - 844088..844414 (+) 327 WP_048608521.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26077.09 Da        Isoelectric Point: 7.2404

>NTDB_id=641266 LVJ10_RS03695 WP_048608563.1 838947..839621(-) (ideA) [Providencia rettgeri strain YK205]
MKSVYPFFIALFAIPAIAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYSNDGAIDAASCGYEPRKQPKRGERLEWEHVVS
AWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRSYGQCDFEVDFKDRRAEPPA
NRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKVRDFKIKTIQGNSNCHVSNSC

Nucleotide


Download         Length: 675 bp        

>NTDB_id=641266 LVJ10_RS03695 WP_048608563.1 838947..839621(-) (ideA) [Providencia rettgeri strain YK205]
ATTAAATCCGTATACCCTTTCTTTATAGCGTTATTCGCTATACCTGCAATTGCAGAACACCCCACATCGTTCAGTCAGGC
AAAACGATTTGCCCGAGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAGCAATGATGGTGCGA
TTGATGCTGCATCTTGCGGATATGAACCAAGAAAGCAACCGAAACGAGGTGAACGCTTAGAGTGGGAACATGTAGTCTCA
GCTTGGGAAATTGGCCATCAACGCCAATGCTGGCAAAATGGTGGTCGTCGGAACTGCGAAAAGAATGATCCTGAGTTTTC
TAAAATGGTTTCGGATCTCCATAACCTCGTACCATCTGTAGGAGAGCTCAATGGGGATAGGTCAAATTTTCGATTTGGCA
TGATTCCGAATGAACCAAGATCCTATGGTCAATGTGATTTCGAAGTTGATTTCAAAGACCGTCGAGCAGAACCACCAGCT
AACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTCAGTAGGCAACAAACTCA
GCTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGACGAATGGGAAAAAGTGCGTGATTTTAAGATTAAAACTATTCAAG
GTAACTCTAACTGCCATGTGTCAAATAGCTGTTAA

Domains

Predicted by InterProScan.

Endonuclease I (Endonuclease_1)

(50-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

92.76

98.661

0.915
  dns Vibrio parahaemolyticus RIMD 2210633

52.381

100

0.54
  dns Aliivibrio fischeri ES114

52.423

100

0.531
  dns Vibrio cholerae strain A1552

50.661

100

0.513
  dns Campylobacter jejuni RM1221

37.674

95.982

0.362