Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LVJ09_RS00115 Genome accession   NZ_CP090216
Coordinates   26265..26768 (+) Length   167 a.a.
NCBI ID   WP_023606928.1    Uniprot ID   V6Q3E5
Organism   Vagococcus lutrae strain VF20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 21265..31768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ09_RS00100 (LVJ09_00100) gyrB 21296..23251 (+) 1956 WP_248848442.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LVJ09_RS00105 (LVJ09_00105) gyrA 23275..25752 (+) 2478 WP_274981648.1 DNA gyrase subunit A -
  LVJ09_RS00110 (LVJ09_00110) rpsF 25923..26222 (+) 300 WP_126762178.1 30S ribosomal protein S6 -
  LVJ09_RS00115 (LVJ09_00115) ssbA 26265..26768 (+) 504 WP_023606928.1 single-stranded DNA-binding protein Machinery gene
  LVJ09_RS00120 (LVJ09_00120) rpsR 26790..27029 (+) 240 WP_023606929.1 30S ribosomal protein S18 -
  LVJ09_RS00125 (LVJ09_00125) rplI 27175..27627 (+) 453 WP_023606930.1 50S ribosomal protein L9 -
  LVJ09_RS00130 (LVJ09_00130) dnaB 27657..29018 (+) 1362 WP_023606931.1 replicative DNA helicase -
  LVJ09_RS00135 (LVJ09_00135) - 29091..30710 (-) 1620 WP_023606932.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18588.48 Da        Isoelectric Point: 4.7420

>NTDB_id=641230 LVJ09_RS00115 WP_023606928.1 26265..26768(+) (ssbA) [Vagococcus lutrae strain VF20]
MINNVVLVGRLTKDPDLRYTANGVAVATFTLAIDRPFTNQSGNREADFINTVIWRKPAETLANYARKGTLIGVVGRIQTR
NYENQQGQRVYVTEVVADSFQFLESKSVNEQRRQESGTDFGAQPNNNQSFNQSSSSMPQQGMPDFGRDSDPFASSAKIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=641230 LVJ09_RS00115 WP_023606928.1 26265..26768(+) (ssbA) [Vagococcus lutrae strain VF20]
ATGATTAATAATGTCGTACTAGTAGGTAGATTAACTAAAGATCCAGATTTGCGTTATACAGCAAACGGTGTCGCTGTTGC
AACATTCACATTAGCAATTGATCGTCCATTTACAAATCAAAGCGGTAATCGCGAAGCTGATTTTATCAACACGGTGATTT
GGCGAAAACCAGCAGAAACGCTGGCTAATTACGCACGAAAAGGGACTCTGATTGGTGTGGTAGGACGTATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTCTATGTGACAGAAGTGGTAGCAGATAGTTTCCAATTCTTAGAGTCGAAGTC
AGTTAATGAACAACGACGTCAAGAATCTGGTACAGATTTTGGTGCTCAACCTAATAATAACCAAAGTTTTAATCAATCAT
CATCTTCAATGCCACAACAAGGTATGCCGGATTTTGGTCGTGATTCAGACCCATTCGCATCATCAGCTAAGATTGATATC
TCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V6Q3E5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.522

100

0.623
  ssb Latilactobacillus sakei subsp. sakei 23K

59.064

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

63.473

0.389
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.371