Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LZU96_RS18625 Genome accession   NZ_CP090207
Coordinates   3914028..3914582 (-) Length   184 a.a.
NCBI ID   WP_094122154.1    Uniprot ID   -
Organism   Pantoea agglomerans strain HJS002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3909028..3919582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZU96_RS18605 (LZU96_18605) - 3910033..3910428 (+) 396 WP_233985563.1 transposase -
  LZU96_RS18610 (LZU96_18610) - 3911353..3912312 (-) 960 WP_233985564.1 DMT family transporter -
  LZU96_RS18615 (LZU96_18615) - 3912388..3913215 (-) 828 WP_233985565.1 AraC family transcriptional regulator -
  LZU96_RS18620 (LZU96_18620) - 3913337..3913870 (+) 534 WP_233985566.1 isochorismatase family protein -
  LZU96_RS18625 (LZU96_18625) ssb 3914028..3914582 (-) 555 WP_094122154.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LZU96_RS18630 (LZU96_18630) uvrA 3914807..3917635 (+) 2829 WP_233985567.1 excinuclease ABC subunit UvrA -
  LZU96_RS18635 (LZU96_18635) - 3917866..3918930 (+) 1065 WP_233985568.1 NAD(P)-dependent alcohol dehydrogenase -
  LZU96_RS18640 (LZU96_18640) - 3918983..3919306 (-) 324 WP_094122151.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19755.65 Da        Isoelectric Point: 5.2456

>NTDB_id=641204 LZU96_RS18625 WP_094122154.1 3914028..3914582(-) (ssb) [Pantoea agglomerans strain HJS002]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAGAPAGGAQGGGNNNGWGQPQQPQGSNNQFSGGAQSRPQ
QQPQSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=641204 LZU96_RS18625 WP_094122154.1 3914028..3914582(-) (ssb) [Pantoea agglomerans strain HJS002]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTATATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACGTCGGAAAGCTGGCGCGACAAGCAGACCGGTGAAAACAAAGAGATCACTG
AATGGCACCGTGTGGTGTTGTTTGGCAAGCTGGCCGAAGTGGCGGGCGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGCAGGACCAGGGCGGCCAGGAACGTTACACCACGGAAGTGGTGGTCAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGCAGGGCGGTAACGCCGGTGCACCGGCAGGCGGCGCGCAGGGCGGCGGCA
ACAACAATGGCTGGGGTCAGCCACAGCAGCCGCAGGGCAGCAACAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAG
CAGCAGCCACAAAGCGCACCTGCCAGCAACAACAACGAACCGCCAATGGATTTTGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.213

100

0.717
  ssb Glaesserella parasuis strain SC1401

57.979

100

0.592
  ssb Neisseria meningitidis MC58

45.745

100

0.467
  ssb Neisseria gonorrhoeae MS11

45.745

100

0.467