Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LXM48_RS16115 Genome accession   NZ_CP090180
Coordinates   3324792..3325376 (+) Length   194 a.a.
NCBI ID   WP_004691666.1    Uniprot ID   A0A7H8SPE4
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3325835..3328115 3324792..3325376 flank 459


Gene organization within MGE regions


Location: 3324792..3328115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS16115 (LXM48_16115) ssb 3324792..3325376 (+) 585 WP_004691666.1 single-stranded DNA-binding protein Machinery gene
  LXM48_RS16120 (LXM48_16120) - 3325528..3325701 (+) 174 Protein_3118 site-specific integrase -
  LXM48_RS16125 (LXM48_16125) - 3325772..3326704 (+) 933 Protein_3119 IS5 family transposase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21300.03 Da        Isoelectric Point: 6.4819

>NTDB_id=641041 LXM48_RS16115 WP_004691666.1 3324792..3325376(+) (ssb) [Acinetobacter johnsonii strain DJ-Red]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQMQGGNDGYAQPRFNNNQGGGYNNNNNQGGYGGNPAAGNSNNQQ
SGYANNNPSGFAPKAAPQSAPAAAPADMDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=641041 LXM48_RS16115 WP_004691666.1 3324792..3325376(+) (ssb) [Acinetobacter johnsonii strain DJ-Red]
ATGCGCGGTGTAAATAAAGTTATTTTAGTGGGCACATTAGGCCGAGATCCAGAGACGAAAACTTTTCCAAACGGTGGTTC
GTTGACCCAGTTTTCAATTGCCACGAGCGACTCTTGGACAGACAAAAGCACAGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGTTACACAACCGTCTAGGTGAAATTGCGCAACAATACCTACGTAAAGGTTCGAAAGTTTATATTGAAGGT
TCACTGCGTACTCGTCAGTGGACAGATCAAAATGGTCAAGAACGCTACACTACAGAAATTCGTGGTGAGCAAATGCAGAT
GCTCGACAACAACCGTCAGCAAGGTGAGCAAATGCAAGGCGGAAATGATGGTTATGCACAACCACGTTTCAACAATAACC
AAGGTGGTGGTTATAACAATAACAACAACCAAGGCGGTTATGGCGGCAATCCTGCAGCGGGCAATAGCAACAACCAACAA
AGTGGTTATGCGAACAATAATCCAAGCGGTTTTGCACCAAAGGCGGCACCTCAGTCAGCGCCTGCGGCAGCACCAGCAGA
TATGGATGATGATCTTCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SPE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.724

100

0.459
  ssb Neisseria meningitidis MC58

41.414

100

0.423
  ssb Neisseria gonorrhoeae MS11

41.414

100

0.423