Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   LXE94_RS18510 Genome accession   NZ_CP090125
Coordinates   3469967..3471124 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain Bs96     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3464967..3476124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS18480 (LXE94_18435) yvyF 3465220..3465639 (-) 420 WP_144453731.1 TIGR03826 family flagellar region protein -
  LXE94_RS18485 (LXE94_18440) comFC 3465713..3466435 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  LXE94_RS18490 (LXE94_18445) comFB 3466399..3466695 (-) 297 WP_144453733.1 late competence protein ComFB -
  LXE94_RS18495 (LXE94_18450) comFA 3466755..3468146 (-) 1392 WP_070547860.1 ATP-dependent helicase ComFA Machinery gene
  LXE94_RS18500 (LXE94_18455) fakBA 3468252..3469097 (-) 846 WP_257986243.1 DegV family protein -
  LXE94_RS18505 (LXE94_18460) degU 3469195..3469884 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LXE94_RS18510 (LXE94_18465) degS 3469967..3471124 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  LXE94_RS18515 (LXE94_18470) yvyE 3471341..3471994 (+) 654 WP_003227979.1 YigZ family protein -
  LXE94_RS18520 (LXE94_18475) tagV 3471994..3473169 (+) 1176 WP_257986244.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  LXE94_RS18525 (LXE94_18480) tagO 3473242..3474318 (-) 1077 WP_043858787.1 MraY family glycosyltransferase -
  LXE94_RS18530 (LXE94_18485) tuaH 3474463..3475656 (-) 1194 WP_257986710.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=640729 LXE94_RS18510 WP_003227983.1 3469967..3471124(-) (degS) [Bacillus subtilis strain Bs96]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=640729 LXE94_RS18510 WP_003227983.1 3469967..3471124(-) (degS) [Bacillus subtilis strain Bs96]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTCGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATCGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1