Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LXE94_RS18505 Genome accession   NZ_CP090125
Coordinates   3469195..3469884 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain Bs96     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3464195..3474884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS18470 (LXE94_18425) flgN 3464375..3464857 (-) 483 WP_041351273.1 flagellar protein FlgN -
  LXE94_RS18475 (LXE94_18430) flgM 3464873..3465139 (-) 267 WP_144453729.1 flagellar biosynthesis anti-sigma factor FlgM -
  LXE94_RS18480 (LXE94_18435) yvyF 3465220..3465639 (-) 420 WP_144453731.1 TIGR03826 family flagellar region protein -
  LXE94_RS18485 (LXE94_18440) comFC 3465713..3466435 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  LXE94_RS18490 (LXE94_18445) comFB 3466399..3466695 (-) 297 WP_144453733.1 late competence protein ComFB -
  LXE94_RS18495 (LXE94_18450) comFA 3466755..3468146 (-) 1392 WP_070547860.1 ATP-dependent helicase ComFA Machinery gene
  LXE94_RS18500 (LXE94_18455) fakBA 3468252..3469097 (-) 846 WP_257986243.1 DegV family protein -
  LXE94_RS18505 (LXE94_18460) degU 3469195..3469884 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LXE94_RS18510 (LXE94_18465) degS 3469967..3471124 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  LXE94_RS18515 (LXE94_18470) yvyE 3471341..3471994 (+) 654 WP_003227979.1 YigZ family protein -
  LXE94_RS18520 (LXE94_18475) tagV 3471994..3473169 (+) 1176 WP_257986244.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  LXE94_RS18525 (LXE94_18480) tagO 3473242..3474318 (-) 1077 WP_043858787.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=640728 LXE94_RS18505 WP_003219701.1 3469195..3469884(-) (degU) [Bacillus subtilis strain Bs96]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=640728 LXE94_RS18505 WP_003219701.1 3469195..3469884(-) (degU) [Bacillus subtilis strain Bs96]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1